TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCCTAGCCACTCCCATTCTCGGGGTGTAATAGTGAGGTGATGG
GCAAGCAATGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCA
CGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGTGTCTTCCTG
AGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGAGTC
TTTCTTGCCGGTGGAGCGGGACGCAATATTCCCCCTTCTTAGTGGGATTG
AAGCATCCATATTTTGGTTTTTTTTCTTGTTAAGCTTCATATTATCCATG
AGCTGAATCATGGGTATTCTGAACTTTTGGGCAATATCCACTTATCAGTA
AGTGCATACTATCCCCCCCCTCCTTTGGGGTCTGGGTTATCTCACACAGG
GTATTTTCTAGTTCATCTATTTGCCTGCAAAATTCTTATTATTTATTGAA
GTTTCGACTGAATAAAATTTATCGCACCAAAATTTGCTCCTCCATTAACA
TAACAACTATATCTAATTATGTCTTAGTTCTTTTAGTTATCAATCACTAG
CCTTTATCCTTTTTCTCTCAACTTTTTATTTCGTTCCTTTTCCTTTTTTA
ACCCGTGTTGTAATATCCTAATAACCTCCATTAATCGAACCCTTCTTTTT
ACCACCCCTTTTTCCCCCCACCC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTATTTTTATATGTTAATAATC
TTCAAATGTGATCAGAAAACATACAAAAAAGTTTTCCCAACAGCAGCTCT
AGTAAATAATTTGTTTTATTATCCAGAAAACCAAAAGTGATAACCTTATT
TTCCTGGCAGTACAACAACCTCCCTACAATATCTGAAAATGTCCTATGTT
TATGCATAATATATTATAATTTATACATGTACGTATATATGTACATATGA
AATTTATATTAGATTACGTAGAGCATTTTCATCTGTTAAAATGAGTTTAG
AAAAAGAAACAAAAGCCTCACCTCATGAAAATGTGAGAACAATCTTTTAA
CATTGTTCAAGATTTTGAACCAAATCAGAATGACAAGCAGAAACAATTAT
TGAGTAAATTAAAGTTATTTGCTTAAGATCATCCATATAATTGCTAAATA
TTGATTCACTATCAGACAAAAGCTAGTTGGTTTTTATGTAAAACATGAAA
TGAGTTAGAGAATCCAAGTAACTTGATTACAGTAATATTAATACCCACTG
TATGTAATTTACATCTAATTAATAAATAAAATATCATTTAATTCACCATT
TGAAAAATTGGAGAAGAAAACATAATGACAAACCTTCCAGAATGTATTAT
TTGTCATCACAACTCATGGGAN

Query= MSMg01no178_o11.g1 MSMg01no178_o11.g1 CHROMAT_FILE:
MSMg01no178_o11.g1 PHD_FILE: MSMg01no178_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:47 2005
         (643 letters)



>mm_chr3_124964138_124965180
          Length = 1043

 Score = 1201 bits (621), Expect = 0.0
 Identities = 633/643 (98%), Gaps = 10/643 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtatttttatatgttaataatcttcaaatgtgatcagaaaacatacaaaaaagttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtatttttatatgttaataatcttcaaatgtgatcagaaaacatacaaaaaagttttc 260

                                                                       
Query: 61  ccaacagcagctctagtaaataatttgttttattatccagaaaaccaaaagtgataacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaacagcagctctagtaaataatttgttttattatccagaaaaccaaaagtgataacct 320

                                                                       
Query: 121 tattttcctggcagtacaacaacctccctacaatatctgaaaatgtcctatgtttatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttcctggcagtacaacaacctccctacaatatctgaaaatgtcctatgtttatgca 380

                                                                       
Query: 181 taatatattataatttatacatgtacgtatatatgtacatatgaaatttatattagatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatattataatttatacatgtacgtatatatgtacatatgaaatttatattagatta 440

                                                                       
Query: 241 cgtagagcattttcatctgttaaaatgagtttagaaaaagaaacaaaagcctcacctcat 300
           |||||||||||||||||||||          |||||||||||||||||||||||||||||
Sbjct: 441 cgtagagcattttcatctgtt----------tagaaaaagaaacaaaagcctcacctcat 490

                                                                       
Query: 301 gaaaatgtgagaacaatcttttaacattgttcaagattttgaaccaaatcagaatgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaaaatgtgagaacaatcttttaacattgttcaagattttgaaccaaatcagaatgacaa 550

                                                                       
Query: 361 gcagaaacaattattgagtaaattaaagttatttgcttaagatcatccatataattgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcagaaacaattattgagtaaattaaagttatttgcttaagatcatccatataattgcta 610

                                                                       
Query: 421 aatattgattcactatcagacaaaagctagttggtttttatgtaaaacatgaaatgagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aatattgattcactatcagacaaaagctagttggtttttatgtaaaacatgaaatgagtt 670

                                                                       
Query: 481 agagaatccaagtaacttgattacagtaatattaatacccactgtatgtaatttacatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agagaatccaagtaacttgattacagtaatattaatacccactgtatgtaatttacatct 730

                                                                       
Query: 541 aattaataaataaaatatcatttaattcaccatttgaaaaattggagaagaaaacataat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aattaataaataaaatatcatttaattcaccatttgaaaaattggagaagaaaacataat 790

                                                      
Query: 601 gacaaaccttccagaatgtattatttgtcatcacaactcatgg 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gacaaaccttccagaatgtattatttgtcatcacaactcatgg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)