Query= MSMg01no179_e18.b1 MSMg01no179_e18.b1 CHROMAT_FILE:
MSMg01no179_e18.b1 PHD_FILE: MSMg01no179_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:16 2005
(601 letters)
>mm_chr3_20208720_20209720
Length = 1001
Score = 1123 bits (581), Expect = 0.0
Identities = 593/597 (99%)
Strand = Plus / Plus
Query: 5 gaattctctgctcttacgaactgttttatctactcatcacaacaacgggccactcagttc 64
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgctcgtaggaactgtattatctactcatcacaacaacgggccactcagttc 264
Query: 65 tgttcttggggtttgcatagtaattagtccggtgtaactcaactgtagaggttggattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttcttggggtttgcatagtaattagtccggtgtaactcaactgtagaggttggattta 324
Query: 125 gaatttcgacctggatagtctgactctgggaactgacttttcacatacttgtccctcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatttcgacctggatagtctgactctgggaactgacttttcacatacttgtccctcctg 384
Query: 185 tggaaagtggcaccacaaatcctgcacctggaagtaattctctaaaatactgtctaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaaagtggcaccacaaatcctgcacctggaagtaattctctaaaatactgtctaagaa 444
Query: 245 tcatcattcagagttatcatatttctctatgtctgtttcacatttacagcatttgaagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatcattcagagttatcatatttctctatgtctgtttcacatttacagcatttgaagtt 504
Query: 305 ataacttttaatgattgtttctcttgaacatttctttcagtgtttctcagccatctgaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataacttttaatgattgtttctcttgaacatttctttcagtgtttctcagccatctgaat 564
Query: 365 tttccctttacaaattctgtttagatctgtacaccatttttaaatggggcatttgttttc 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttccctttagaaattctgtttagatctgtacaccatttttaaatggggcatttgttttc 624
Query: 425 ttgatatctagttttttgagttctttatatattttgtatattagtaccctgttgcatctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgatatctagttttttgagttctttatatattttgtatattagtaccctgttgcatctg 684
Query: 485 gaggttggtagaaatattttcatgtctgtaggctgccactttgtccaaatgaccttgtcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaggttggtagaaatattttcatgtctgtaggctgccactttgtccaaatgaccttgtcc 744
Query: 545 tttgcagtatagatgtttctccgtttcctgaagtctctcatgaggagagagacgcag 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgcagtatagatgtttctccgtttcctgaagtctctcatgaggagagagacgcag 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_e18.g1 MSMg01no179_e18.g1 CHROMAT_FILE:
MSMg01no179_e18.g1 PHD_FILE: MSMg01no179_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:16 2005
(663 letters)
>mm_chr3_20309838_20310903
Length = 1066
Score = 1226 bits (634), Expect = 0.0
Identities = 656/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Minus
Query: 1 cttcaaaatatcaaagaaagtctactgacatctagaatatatgaagaatggcttggggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cttcaaaatatcaaagaaagtctactgacatctagaatatatgaagaatggcttggggta 805
Query: 61 cttgaccaggtcaatgaagaagagaaagtagccactgtgcagaggtaatgactattgaac 120
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 cttgaccaggtcattgaagaagagaaagtaaccactgtgcagaggtaatgactattgaac 745
Query: 121 aaaatcatcaaagaagaaatatttttttcacacattagagattatatatcatagaaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaatcatcaaagaagaaatatttttttcacacattagagattatatatcatagaaatac 685
Query: 181 ttac-aaaaacactcattgacaacaaaaggtatcaattgttcaccaccattgaagacatt 239
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttacaaaaaatactcattgacaacaaaaggtatcaattgttcaccaccattgaagacatt 625
Query: 240 tttaaagagatgtgtgacttgtagacacaggggcccatgcttacaatttctgctttatat 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaaagagacgtgtgacttgtagacacaggggcccatgcttacaatttctgctttatat 565
Query: 300 tctaattaaatttgtcttttattttctgaagttggggaaacatttcaagaaatatttcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctaattaaatttgtcttttattttctgaagttggggaaacatttcaagaaatatttcta 505
Query: 360 gtacaccttctaactttcatcttattgtcaggatgccttgtctaagatacagttactctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtacaccttctaactttcatcttattgtcaggatgccttgtctaagatacagttactctg 445
Query: 420 atccattccttcatatttacaaattgagtagacatttttaaaaag--aaaaaaactgtcc 477
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 atccattccttcatatttacaaattgagtagacatttttaaaaagaaaaaaaaactgtcc 385
Query: 478 ctgtgttctgcctttagaaaactactgcactcaaatatcacacttatggacaacttttca 537
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 ctgtgttctgcctttagaaaactactgcactcaaatatcacacgtatggacaacttttca 325
Query: 538 gaatatcaatttgagagaaattgatgtgtgaatcaaatgacggcttatgatttttctgtt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatatcaatttgagagaaattgatgtgtgaatcaaatgacggcttatgatttttctgtt 265
Query: 598 ggcattgcaccaagtaacctgtgcctacctagttcccacaataaaggattagcaatggat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcattgcaccaagtaacctgtgcctacctagttcccacaataaaggattagcaatggat 205
Query: 658 atca 661
||||
Sbjct: 204 atca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1066
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1056
Effective search space: 689568
Effective search space used: 689568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
