BAC Information

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BAC

Clone NameMSMg01-179H02
Chromosome3 (Build37)
Map Location 83,109,335 - 83,109,672
singlet/doubletsinglet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179H02.T7 (MSMg01no179_h02.b1)MSMg01-179H02.TJ (MSMg01no179_h02.g1)
ACCAG373227AG373228
length722723
length of high quality
(start - end)
349 (64 - 412)608 (70 - 677)
definitionCHROMAT_FILE: MSMg01no179_h02.b1 PHD_FILE: MSMg01no179_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:27 2005CHROMAT_FILE: MSMg01no179_h02.g1 PHD_FILE: MSMg01no179_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GATACTGGCCAAGATATAATCAATGGGATTGTATTAGTTTTCTAGCACTA
CAGTGAAACACTTGAACCAACTAGCCTATTAAATAAGACCTCTTTTTTGT
TTAGTTACTCTGAAAGTTTTAGGCAAAGCTAAGTGGCCCTGCTGTGTTGG
GTTTCTGGGAGGGCAGTATCATGGTGGGATGGTAGAGTAGGAATAGAGTC
CTCTTTCACATCCCCAGGACCCAACAGTGAGCCACAGGCTTGCCACCATT
TCCCAGAAGTACCATCACCTTGGTTTTCACTGAGCTGTTAACATGGTAGA
CCTTTGGTAAACATCCACATCCGAAGTATAGGCATAGCTAATGTTGCCCT
TGTCTGAAACACGATGTCAGGGTAGAATATAAGAAACCAAAACCCACTTC
TAACACTGTGCCTTCTTGCTTAACACTTGACTTAAAAAGCTAAAGGATAG
ACATGTCAGAAGTCTCTATCCTTCTAATTCCATGTTTTATTAATTCCGTA
TAAGATTATCTTTTTAGTTCTATTTAATATTTTGGAGTTGTAATATTCAA
TATTTACTACTGTATATAGCGTTGTTAGACCTGATTTATTATCCTAGTAA
CGCCCTTCTGAATTTGTACTCTTTCCGGCACCTTAGTTCACCCTTATGTG
TATTTTGCCCCTCCCCTGCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAAATTCAAATAACCCCATTAAAATAGGG
TACAGAGCTAAACAAAGAACTCTCAACTGAGGAATACTGAAGGGCTGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACTCTGAGATTCCACCTCACACCAGTCAGAATGGCTAGGATCAA
AAATTCAGGCGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACAC
TCCTCTATTGCTGGTGGGATTGCAAGTTGGAAAAACCACTCTGGAAATCA
GTCTGGCAGTTCCTCAGAAAACTGGACTTATTACTACTGGTAGATCCAGC
AATACCTCTCATGGGCATATACTCAGATGTTCCAACTTGCAATAAGGACA
CATGCACCACTATGTTCATAGCAGTTTTATTTATAATAGCCAGAGGCTGG
AAAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGATACATTTAC
ACAATGGAGAACTACTCAACTATTAAAAACAATGAATTTATGAAATTCGT
GGGTACATGGATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAAT
CACAAAAGAAGTCACTTGATATGCACTCACTGATAAGTGGACATTAGCCC
AGAAACCTAGAATACCCAAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_h02.b1 MSMg01no179_h02.b1 CHROMAT_FILE:
MSMg01no179_h02.b1 PHD_FILE: MSMg01no179_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:27 2005
         (349 letters)



>mm_chr3_83109124_83109873
          Length = 750

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%), Gaps = 1/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gggattgtattagttttctagcactacagtgaaacacttgaaccaactagcctattaaat 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 212 gggattgtattagttttctagcactacagtgaaacacttgaaccaactagcctattaaac 271

                                                                       
Query: 72  aagacctcttttttgtttagttactctgaaagttttaggcaaagctaagtggccctgctg 131
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagacctctcttttgtttagttactctgaaagttttaggcaaagctaagtggccctgctg 331

                                                                       
Query: 132 tgttgggtttctgggagggcagtatcatggtgggatggtagagtaggaatagagtcctct 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgttgggtttctgggagggcagtatcatggtgggatggtagagtaggaatagagtcctct 391

                                                                       
Query: 192 ttcacatccccaggacccaacagtgagccacaggcttgccaccatttcccagaagtacca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttcacatccccaggacccaacagtgagccacaggcttgccaccatttcccagaagtacca 451

                                                                       
Query: 252 tcaccttggtttt-cactgagctgttaacatggtagacctttggtaaacatccacatccg 310
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 452 tcaccttggtttttcactgagctgttaacatggtagacctttgggaaacatccacatccg 511

                                                 
Query: 311 aagtataggcatagctaatgttgcccttgtctgaaaca 348
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagtataggcatagctaatgttgcccttgtctgaaaca 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 750
Length adjustment: 9
Effective length of query: 340
Effective length of database: 741
Effective search space:   251940
Effective search space used:   251940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)