BAC Information

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BAC

Clone NameMSMg01-179O08
Chromosome3 (Build37)
Map Location 78,939,321 - 78,939,806
singlet/doubletsinglet
Overlap geneRapgef2
Upstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179O08.T7 (MSMg01no179_o08.b1)MSMg01-179O08.TJ (MSMg01no179_o08.g1)
ACCAG373533AG373534
length757730
length of high quality
(start - end)
468 (44 - 511)486 (77 - 562)
definitionCHROMAT_FILE: MSMg01no179_o08.b1 PHD_FILE: MSMg01no179_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:01 2005CHROMAT_FILE: MSMg01no179_o08.g1 PHD_FILE: MSMg01no179_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCTCACCTGATGCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGCAG
ATGCTGCCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGAAAATCAGTCTGGCGGTTCCTTAGA
AAATTGGACATAGCACTACCAGATGATCCATATACCTCTTCTGGGCATAT
ATCCAGAAGATGTCCCAACCGGTATGAAGGACACATGCTCCACTATGTTC
ATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGT
ACTACTCTGCTATTATAAAGAAAGAATTTATGAAACTCCTAGGCCAATGG
ATGGACCTGGAAGGTCATCATCCCTGAGCGAGTTAACCCCTATCCCAAGG
TAACTCCCACCAATATGTAACTCACTTGATAAATTGGGATACTAAGCCCA
TAAACTTTAATATTCTCCCAAGAACACCAAGACAACAAATTTTGGCCAAT
ATGTGCTCGAAACCTCCTACTAATCAATGGAAGAATCCTTTGCTGTTGTG
ACCCCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCCGCCAGTTACATGGCGAG
ACCCTGTCTCAAAAGGGCTGCCCTTACTATAGGAAAGAATACAGCATGAT
TTTAGTAACTCTTTGTGTGTTTATACTTTTGTAGTTTTCTTGAAGCCTGG
GAAAAATTTTAAAGGTATAGAAAATGAACAATACATTATCAGAAGAAAGA
AAAGTGAAATTATAAATGTCCCAGCTAAAGGAAATATAGGAGTGGTGACC
ACCAACCCCCAACCATGTGCCTTTTACCAGACAGATATCTCATTGTGCTG
TTGGGCACATTCCCAGCTTCCTTTCCCTTGCATTATTCTTATTTCCTCTC
CCACTTTGAAAGAAGCAATGATCTAATATAAGTAGAAGCTAAAGCAGTTC
TCTAGTGGATAATAAACCATGAAAGTGGACAGTGATGATATTTAGTGAAG
TGGGGTTTGCTCTAGAAAAAGGAATGTACTTAATTTAAATATTCTTTAAG
TTTCTCCCCAATAGGAGAGTGTGGGTTATATCATAGTTCTTCCTTATTAT
AGCGGATTGTTAGCTGAATGACTTTTTTACAATTGTTTTGTAGCCAGGCC
CATCTTTTAATCTCAGCACTTGGGAGGCATATGCAGGTGGATCTCCTGTG
AGTTCAAGGTCTGGTGTAGTCTGTTCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_o08.g1 MSMg01no179_o08.g1 CHROMAT_FILE:
MSMg01no179_o08.g1 PHD_FILE: MSMg01no179_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
         (486 letters)



>mm_chr3_78939083_78939968
          Length = 886

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcccgccagttacatggcgagaccctgtctcaaaagggctgcccttactataggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 caggcccgccagttacatggcgagaccctgtctcaaaagggctgcccttactataggaaa 665

                                                                       
Query: 61  gaatacagcatgattttagtaactctttgtgtgtttatacttttgtagttttcttgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaatacagcatgattttagtaactctttgtgtgtttatacttttgtagttttcttgaagc 605

                                                                       
Query: 121 ctgggaaaaattttaaaggtatagaaaatgaacaatacattatcagaagaaagaaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctgggaaaaattttaaaggtatagaaaatgaacaatacattatcagaagaaagaaaagtg 545

                                                                       
Query: 181 aaattataaatgtcccagctaaaggaaatataggagtggtgaccaccaacccccaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaattataaatgtcccagctaaaggaaatataggagtggtgaccaccaacccccaaccat 485

                                                                       
Query: 241 gtgccttttaccagacagatatctcattgtgctgttgggcacattcccagcttcctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgccttttaccagacagatatctcattgtgctgttgggcacattcccagcttcctttcc 425

                                                                       
Query: 301 cttgcattattcttatttcctctcccactttgaaagaagcaatgatctaatataagtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttgcattattcttatttcctctcccactttgaaagaagcaatgatctaatataagtaga 365

                                                                       
Query: 361 agctaaagcagttctctagtggataataaaccatgaaagtggacagtgatgatatttagt 420
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 364 agctaaagcagctctctagtggataataaaccatgaaagtggacagtgatgatagttagt 305

                                                                       
Query: 421 gaagtggggtttgctctagaaaaaggaatgtacttaatttaaatattctttaagtttctc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 304 gaagtggggtttgctctagaaaaaggaatgtgcttaatttaaatattctttaagtttctc 245

                 
Query: 481 cccaat 486
           ||||||
Sbjct: 244 cccaat 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)