BAC Information

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BAC

Clone NameMSMg01-180A03
Chromosome3 (Build37)
Map Location 20,729,562 - 20,730,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180A03.T7 (MSMg01no180_a03.b1)MSMg01-180A03.TJ (MSMg01no180_a03.g1)
ACCAG373611AG373612
length7131,822
length of high quality
(start - end)		633 (46 - 678)---
definitionCHROMAT_FILE: MSMg01no180_a03.b1 PHD_FILE: MSMg01no180_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:09 2005CHROMAT_FILE: MSMg01no180_a03.g1 PHD_FILE: MSMg01no180_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCCATTAATTCCAATTGCATTTCGGAGGTGTACAGGAAAGCAAA
TACCTCTCCCACAGAGGCTCACCCAATAACACCACAGTTCCTTCTCTCTT
TGAAGACTGGTTCAGGAGGCTGCGACTAATATCACTTTGCCTGCAGTGTT
TTGTCTTGGCAAAGCTTCGGAAGTATTCATGATTTTACTTGTTTCTGTGG
CTCTAATACTGATTGTCTGTCAAGGGGGTAGAAATATGGCTTTTATTTTT
CTGGGGTGATCAATATGTTTAAAGGTTATCTTCCTATGCTTCCTGAAATA
AGCTAATAAACTAATAAACTAATCTTAAATTCTCTAAAACATCCTAATTT
AACTTTTGTCTTATTTTCTTTGGATCTCTAAAAATAAAGATTTCTTTTTG
TCTGAGTAGGCCTTTTTATGAATGTCATCAGTTTCCAGTACACAGACCAT
GGGAAGACTAACTCCATGAAGGTTAAAGAAAAACAAGGGAAGAATCATAT
GAAAGGTAGAACTTATGATCAAGATGAGACATTATGGTAGTTGTGTAGGA
TCAAGCAAATGTAACAGCAAAGTTCTAATTTGAGCAAGAATGGGTTGTAT
ATAATTCAATGGTAATTTTAAATCTAAAATTTANAATACCTGAAGACTGA
CCAAAAAATGGTG

AAGTTAGCCAGNTCGGTCGTGTATGGTTCTGGGGGCGGGGACGAGGCNCN
NGGTTTTTCGTACATAGCGAAGNGAGGAGGGGGGGGNNANAANTNAANNT
AAGANNNANGTGAATTTTCTCACAGCCAAATAAGAAGGAGTGTAGCGTCG
AAGCGAGAACACATAAGACGTGATAGTGNTTTGTCCGTAGGCTGTAGGCG
TNTCAGTCGCATTGCTGGATGTGTCATATTACGCCTTCTCTGCTTTCTTA
TATGACCTGCGTCAGCACTGTGATGATACAATATATATAAACCATATTAG
TCACAGAAAGCCTAGTGTGATAGGATATGGTTACGATTCGTTGCAGATAC
GATTTACATGTCTATGATAAGCGAGCTTGTGCTGAGACAGATAGCATACN
AGAGAGCAACGAGTATGAGGAGTCTGTTCGTGTGGCTCCATCTGCTAACG
CCAGACAGGTNTGGCGAAGATAACGCCAGCGCAGTCGACGAGACAGCATA
TCTACAGCTTGTACGGAGATAGACGTGGATATAGCAGTACATGATACTAG
TACAAGGACGCTATGAACAAGNCGNTGTTTTGATATGTGATGGTATAGGG
AGTGCTGATGAAGAGACATCATAGGGACGCTGACACCACACACGTCGCNA
GTCTGAGCCGAGTAATGACACGAGACAGGAGATACNNATATGTGCCTCTC
GTTTGTGCGCAGTATGTGAGCGCGCTGGATGTAGCGCGGCNGTGAGTAAT
GACAGTAGAATANAGAGAAGAGGCGGATGCAGATAGCATCANCAATAGAT
AGATGTAGCAGNTAGTGACACGTACACAGCGCTAGTNTTGACGGCGAGAC
ATGACATGNCGTGATGNTGAGTAACAGATATGCNCAGTAGATGACAGTAT
GCTGACTGTATGATACGACATAACATCATGCAAGTAGTGCGATGGTGNGT
GCGATGCGCGCACCCACACACCACCACGCTCGAGTGTCGAGTAGACCGAT
TGCGAGTGTGTACATTTACACACGACAGTATGAGTCACGCTCCTGCAGCT
ATCGGCACACGTGTANCTATTGCCACATCCGCAGTACATATGCGTAGTAG
CTAGCACATTGTACAGCCCACGATACGTGAGATTATGATTCACTTNGTGA
TCAAATGCTCGATGGANCTGNCACAGTGTANTGTAGCGAGAGGACTGTGA
GAANCATCGGTCGACGATGTCGAACTATAGTACTCAGANGCGAGNANGTA
TGAGTANAGTGACGCGGACTNGTATGGACTGTCACTGCACGATGANCACG
CGCACATGANTATGATATCATAGCGAGCTGCGCGGTGANATTGACATCAG
AACGGTCGCGCCAGCAGTAATGGCGANACGGTGAAGATACAGTCAGAGCC
TACGGCCAGACAGTCCATGTNATGTAATTATTGGTGATAGCAGCGCGTGA
TCTGGAGCACAGACGTGANCGCGAGCGCGCGACATTATCATCAGCTTACA
TATATACGACGGTCATANGAGTGATAACGATCACGGATGACGTGCGTAAT
TATTGTATGCGCGCCTAACGTGCGTATCGTGTGTTCTGAGCGATCAGCGC
AGCGTGAGCACGTCGAGCGGATGAATTANGGTCAGGCCGATNAATCACAG
CAGACGATGCGACGTCGTNTATGATCAAGCATCCNTACTAGTATTATATA
GAGCGCATGTGAATGTGNGTGTCGNCGTACTATCTACGTCTTTGCTCTGC
GGTATGATGATTAGTATGCTGATCTGATGTACNTCTCAGACATCGGTCGG
CNTAACGTCCATCATGTCATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_a03.b1 MSMg01no180_a03.b1 CHROMAT_FILE:
MSMg01no180_a03.b1 PHD_FILE: MSMg01no180_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:09 2005
         (633 letters)



>mm_chr3_20729358_20730389
          Length = 1032

 Score = 1147 bits (593), Expect = 0.0
 Identities = 620/629 (98%), Gaps = 1/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccattaattccaattgcatttcggaggtgtacaggaaagcaaatacctctcc 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattctcccattaagtgcaattgcatttcggaggtgtacaggaaagcaaatacctctcc 773

                                                                       
Query: 65  cacagaggctcacccaataacaccacagttccttctctctttgaagactggttcaggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cacagaggctcacccaataacaccacagttccttctctctttgaagactggttcaggagg 713

                                                                       
Query: 125 ctgcgactaatatcactttgcctgcagtgttttgtcttggcaaagcttcggaagtattca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctgcgactaatatcactttgcctgcagtgttttgtcttggcaaagcttcggaagtattca 653

                                                                       
Query: 185 tgattttacttgtttctgtggctctaatactgattgtctgtcaagggggtagaaatatgg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct: 652 tgattttacttgtttctgtggctctaatactgattgtctgttaagggggtagacatctgg 593

                                                                       
Query: 245 cttttatttttctggggtgatcaatatgtttaaaggttatcttcctatgcttcctgaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttttatttttctggggtgatcaatatgtttaaaggttatcttcctatgcttcctgaaat 533

                                                                       
Query: 305 aagctaataaactaataaactaatcttaaattctctaaaacatcctaatttaacttttgt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 532 aagctaataaactaataaactaatcttaaattctctaaaacatcctaatttaac-tttgt 474

                                                                       
Query: 365 cttattttctttggatctctaaaaataaagatttctttttgtctgagtaggcctttttat 424
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctcattttctttagatctctaaaaataaagatttctttttgtctgagtaggcctttttat 414

                                                                       
Query: 425 gaatgtcatcagtttccagtacacagaccatgggaagactaactccatgaaggttaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaatgtcatcagtttccagtacacagaccatgggaagactaactccatgaaggttaaaga 354

                                                                       
Query: 485 aaaacaagggaagaatcatatgaaaggtagaacttatgatcaagatgagacattatggta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaaacaagggaagaatcatatgaaaggtagaacttatgatcaagatgagacattatggta 294

                                                                       
Query: 545 gttgtgtaggatcaagcaaatgtaacagcaaagttctaatttgagcaagaatgggttgta 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 293 gttgtgtaggatcaagcaaatgtaacagcaaagttctaatttgagcaagaataggttgta 234

                                        
Query: 605 tataattcaatggtaattttaaatctaaa 633
           |||||||||||||||||||||||||||||
Sbjct: 233 tataattcaatggtaattttaaatctaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space:   636706
Effective search space used:   636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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