Query= MSMg01no180_b13.b1 MSMg01no180_b13.b1 CHROMAT_FILE:
MSMg01no180_b13.b1 PHD_FILE: MSMg01no180_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:15 2005
(235 letters)
>mm_chr3_111660036_111660670
Length = 635
Score = 424 bits (219), Expect = e-123
Identities = 231/235 (98%)
Strand = Plus / Minus
Query: 1 attatttgctacttacagtccatattggatagatatatgtatagaccattagtctcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attatttgctacttacagtccatattggatagatatatgtatagaccattagtctcacca 376
Query: 61 atactactgtacctacgacacattcgttttataggactacttctggctatctccagtaac 120
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 atactactgtacctacaacacattagttttataggactacttctggctatctccagtaac 316
Query: 121 atattcatacagcattatccagaaagcagagtttcctaaattcacacagcaagatccata 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atattcatacagcacaatccagaaagcagagtttcctaaattcacacagcaagatccata 256
Query: 181 atttctttttcatattgtaagctattattctacctctccagcaatttctacatct 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atttctttttcatattgtaagctattattctacctctccagcaatttctacatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no180_b13.g1 MSMg01no180_b13.g1 CHROMAT_FILE:
MSMg01no180_b13.g1 PHD_FILE: MSMg01no180_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:15 2005
(647 letters)
>mm_chr3_111503031_111504077
Length = 1047
Score = 1127 bits (583), Expect = 0.0
Identities = 633/651 (97%), Gaps = 5/651 (0%)
Strand = Plus / Plus
Query: 1 accctttccatgttgactctattggcctagttacctgccttctcgc-tgagaatgcaaat 59
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 201 accctttccatgttgactctattggcctagttacctgccttct-gtatgagaatgcaaat 259
Query: 60 tcagggcttagtgtagggtactggtttagaactggtgaggacataaattcaattcctagc 119
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcagggcttagtgtagcatactggtttagaactggtgaggacataaattcaattcctagc 319
Query: 120 accaaaattagttaattaattaaatataaattcatgacaaagactacaacaaataattca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accaaaattagttaattaattaaatataaattcatgacaaagactacaacaaataattca 379
Query: 180 tattgtttttatgagctatatttacttgaaaatttcattcaaattccctagctgctttta 239
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tattgtttttatgagttatatttacttgaaaatttcattcaaaatccctagctgctttta 439
Query: 240 cttttaaacatatatattttggcattacataattactatttttagtttatttctcctttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttttaaacatatatattttggcattacataattactatttttagtttatttctcctttt 499
Query: 300 acaaatttaagaaatcatcttttttttcaataaagtccacactatttcatatgaactcca 359
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 500 acaaatttaagaaatcatcttcttattcaataaaatccacactatttcatatgaactcca 559
Query: 360 aatatcatctgaagctgtatatgccttcttcatcattattgttcttcgtgaacatgaggc 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 560 aatatcatctaaagctgtatatgccttcttcatcattattgttcttcgtgaacatgaagc 619
Query: 420 taaagctgaagaaataacattatattttgtgaatgcacatagactttatacttcagcctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaagctgaagaaataacattatattttgtgaatgcacatagactttatacttcagcctg 679
Query: 480 tattattttaccatgtatataagaaactcttctgaacatgttaggattctt---gcattt 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tattattttaccatgtatataagaaactcttctgaacatgttaggattcttcttgcattt 739
Query: 537 cctgttctttaacattaatactaaacatcactcagctttaaggtcaaactgatcatgtaa 596
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 740 cctgttctttaacattaatactaagcatcactcagctttaaggtcaaactgatcatataa 799
Query: 597 aaatgtcctgattcttgttaaagtttgtgttcttttccctttattcaacaa 647
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 aaatgtcctgattcttgttaaagtttgtgttctcttccctttattcaacaa 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
