Query= MSMg01no180_c12.b1 MSMg01no180_c12.b1 CHROMAT_FILE:
MSMg01no180_c12.b1 PHD_FILE: MSMg01no180_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:20 2005
(440 letters)
>mm_chr3_113651166_113652005
Length = 840
Score = 770 bits (398), Expect = 0.0
Identities = 424/436 (97%), Gaps = 6/436 (1%)
Strand = Plus / Plus
Query: 5 gaattctgattttattcccatctctgctccttgtttttaatccatgttaaatgagcagaa 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgattttactcagatctctgctccttgtttttaatccatgttaaatgagcagaa 264
Query: 65 ctaattataccatgactgttcagatgtattcaaagtgtggttggctttgtaccatcctct 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaattatcccatgactgttcagatgtattcaaagtgtggttggctttgtaccatcctct 324
Query: 125 acatcttgttatatgtattattctcaaacgttaaaaaaatagaagaaaaaaatcaaaata 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 acatcttgttatatgtattattctcaaaccttaaaaaaatagaagaaaaaaatcaaaata 384
Query: 185 aagtaaaaatcaagaaagtagtatatcttgactcatttagaattgagagaacaagtctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtaaaaatcaagaaagtagtatatcttgactcatttagaattgagagaacaagtctct 444
Query: 245 ctttctctttgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttatgcatgtgtgtct 304
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ctttctctttgtgtgtgtgtgtgtgtgtgt------atgtgtgtttatgcatgtgtgtct 498
Query: 305 tgttttctctttcacgctcattctctccctgcttttttcttccctttctccatcaaggtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgttttctctttcacgctcattctctccctgcttttttcttccctttctccatcaaggtg 558
Query: 365 tccttatttatttagatctaggtagcttaggaacctttagtatccaagctggccccaaac 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tccttatttatttagatctaggtagcttaggaatctttagtatccaagctggccccaaac 618
Query: 425 aatagcttcagtcttg 440
||||||||||||||||
Sbjct: 619 aatagcttcagtcttg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_c12.g1 MSMg01no180_c12.g1 CHROMAT_FILE:
MSMg01no180_c12.g1 PHD_FILE: MSMg01no180_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:20 2005
(291 letters)
>mm_chr3_113759329_113760019
Length = 691
Score = 476 bits (246), Expect = e-139
Identities = 272/290 (93%), Gaps = 15/290 (5%)
Strand = Plus / Minus
Query: 1 tcatttctgcaatcaatgatctttttctacattattattatttcaaaagacctttatact 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 394 tcatttctgcaatcaatgatctttttctacattattattatttcaaaagatttttatact 335
Query: 61 attggatcaaattgtctctcatagaaaaaaatgttcccagaaattcatcaatatcatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 attggatcaaattgtctctcatagaaaaaaatgttcccagaaattcatcaatatcatatg 275
Query: 121 aaaattttccaggtaaagtcttacaaaatctctaataccagaattctgagcatgtgttaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaaatttccaggtaaagtcttacaaaatctctaataccagaattctgagcatgtgttaa 215
Query: 181 aatggctagctgtatgtctcagttatcattttactgctatgaagaaacaccatgaacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatggctagctgtatgtctcagttatcattttactgctatgaagaaac------------ 167
Query: 241 ggaacttacaacaaaaagcagttagttgtttatagtttcagacacttagt 290
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ---acttacaacaaaaagcagttagttgtttatagtttcagacacttagt 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
