BAC Information

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BAC

Clone NameMSMg01-180E18
Chromosome3 (Build37)
Map Location 127,603,236 - 127,603,470
singlet/doubletsinglet
Overlap genenone
Upstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
Downstream geneLOC100043382, EG668828, LOC100043393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180E18.T7 (MSMg01no180_e18.b1)MSMg01-180E18.TJ (MSMg01no180_e18.g1)
ACCAG373817AG373818
length697713
length of high quality
(start - end)
316 (49 - 364)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no180_e18.b1 PHD_FILE: MSMg01no180_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005CHROMAT_FILE: MSMg01no180_e18.g1 PHD_FILE: MSMg01no180_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATTTAGCTCTGTACCCATTTTTAACAGGGCTATTTTGGT
TCTCTGGAGTCTAACTTCTTGAGCCCTTTGTATAAATTGGATATTAGCCC
TCAGTCCTTCTTAGAAAGGGGAACAAAATACCCATGGGAGGAGATAAAGA
GACAAAGTATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCC
ACCTAAGGATCCATCCCATATACAGTCACCAAACCCAGACACTCTTGCAG
ATGCCAACAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGA
GTCTCTGCCAGTGTCTGACAAATACAGAGGTGAATGCTCTCAGCCAACCA
TTGGACTAAGCACAGGGTCCCCAATGGAGAAGCTAGAGAAAGGACCCAAG
GAAATGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAAC
CAGTACCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAAAAGTAAACG
TGGAGGGACCCATGGCTCCAGCCACATATGTAGCAGAGTGTGGACTTGTC
AGTCATTAATGGGATGGCCTTAGTCCTGTGATGGCTGGATGCCCCAGTGA
AGGCAAATGCCAGGACAAGGAAGTGTGAGAGGGGTGGGTTGTTGANC
TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTTGACTTCCTTCAATGGT
TCGCTGTAACCTGTAAGGTGGAATCAACCCTTTCCTCCACAAGCTGCTCT
TAGTCATGCTGCAACCATAGCAACAGAAAGCAAAACAGAAGAGCGGGACA
GGGTTGCAGATTAACCATCCCAGAAAGCCAGTTGCTTGCAAAGACAATTT
GCCCTACTCTTGGAATTCATTAAAACCCTCTGTTCGCTTTCTTTCCTCTG
GTGTGTTACCTTTGCTCAGTGGTTTGTTGATTTCTTTCCAGGCAGTAGAA
ATGTTGTCATTTTGGGTGGGGTTGCCCCAGCCAAAATNTTGANATATTTA
CCATATTTCTGGTGCATACCCCCCCAAAAAAAAAAAAAATATCTGCGGCG
GTCCTTTTATTCTCTCCATTTTCATTTTCCCATCCCTCTTCTCTTTTTAC
TCAACTTACTCTAATACCCTACTCTCCTTTTTCCCTCTTATTGTCATCCC
CTTTCCTCCCTTAAGTTTTTCTCCTACTTCCCTTCCTTTCAGTTTTTTTA
AACACCTCCAATTATCATCTCGTTCTCTTTACACACTTATAAATACGCAT
CCACCCCTCCACTCTCGCCATTTTCTTCGCTATCCCACGTCTATTTCTCC
CTTTTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_e18.g1 MSMg01no180_e18.g1 CHROMAT_FILE:
MSMg01no180_e18.g1 PHD_FILE: MSMg01no180_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:30 2005
         (239 letters)



>mm_chr3_127603036_127603673
          Length = 638

 Score =  379 bits (196), Expect = e-110
 Identities = 226/236 (95%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctttcctccacaagctgctcttagtcatgctgcaaccatagcaacagaaagcaaaac 60
           |||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 201 acccttccctccacaagctgctcttagtcgtgcttccaccatagcaacagaaagcaaaac 260

                                                                       
Query: 61  agaagagcgggacagggttgcagattaaccatcccagaaagccagttgcttgcaaagaca 120
           |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct: 261 agaagagcgggacagggttgcagattaaccatcccagacagccagtcacttgcaaagaca 320

                                                                       
Query: 121 atttgccctactcttggaattcattaaaaccctctgttcgctttctttcctctggtgtgt 180
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 321 atttgccctactcttggaattcattaaa-ccctctgttcactttctttcctctggtgtgt 379

                                                                   
Query: 181 tacctttgctcagtggtttgttgatttctttccaggcagtagaaatgttgtcattt 236
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacctttgctcagtggtctgttgatttctttccaggcagtagaaatgttgtcattt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)