BAC Information

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BAC

Clone NameMSMg01-180O05
Chromosome3 (Build37)
Map Location 73,793,089 - 73,793,381
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk3, Bche, LOC667425
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180O05.T7 (MSMg01no180_o05.b1)MSMg01-180O05.TJ (MSMg01no180_o05.g1)
ACCAG374235AG374236
length823735
length of high quality
(start - end)
72 (41 - 112)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no180_o05.b1 PHD_FILE: MSMg01no180_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:14 2005CHROMAT_FILE: MSMg01no180_o05.g1 PHD_FILE: MSMg01no180_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGGTGTTTGAGGCAAGAGTGGGTGGATGGGTAGGGGAGCACCTTCACA
GAGACAGGGAGAGGTTGAACCCGATAGGGGGTNNNCTTTCTCCTCCCCTC
TCTTCCTTCTTCTTTTCCTCTTCTCCCTCTCCCTCTCCCTTTTTTTCTCC
CTTCCCCTCCTTTTCCCCCCCATCTCCCTTTTCCTCCTTTTCTCCCCTTC
TTCTCACCTTTTTCTACACTTCTTTTCATTTTTCTAACAAACCAATAAAA
AACAACTATAAACAACCCCACAAACTTTATTCTTTTACATATATAATCCT
ACCAACCTCTTCCCCATAAATATATATTTTCCCCCCACCCCCCCAATACA
TACATAATTATATCAAACTATAAAATATTTTCTCCCCCCCCCCCACATAA
TATAAAACAAAATCCACCTCAAATCATTAATTAATCACCAAACCACCTTC
ATACCATACCACATTTAACACATCCCCTTAACTATCATAAACATAAATAA
ACTCACAATCTACCCCTTACACCATTACACAATCCACTCTTCCCTCCCAT
ATTTTCCCAACACCATTTACTAAATTAATCAATAACAAAACTATCCAATA
AACCCCCCCCACCCCCCCTTTCCTACCCACTTTACCCCCATTATTTCACT
CACCATACACTATCACACCACAATATTTCAAAATATTCACATATCATAAA
TCCTCCTACCTTTAACACCCTATATCTCCCCAACTTCTTTTATTACCCAC
CCTATAAACTCCCTAACTAATAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGTTTACAAAGATATCATCTTCAGAGTT
GTAAGCCCCAAAATGTGTACCCAGAAATTCCAGTAAATACTAGGAAAATA
ACCTAAAAAAAAAAAAAACAAAAAAAAGGGAAGACAGCGATTTATCAATT
CCTGATAGATAAGGTACTTTATCTGAACTGAAAATAGTTGTCTTCAATAC
AGATATGGGCAGATCCAATAATACTATACACACTAAACTTAAAAGTGTTA
TATGCAGTGTTGAAAAAGATTAGTGGTTATGAATGTTTGCTGATCTTCCA
AGAGGACTGTTGTTTAGTTACCAGCACCCAGAAATATGGCTAACAACCAA
CTAATTCCCCAGTTTTAGAGATCTGATAGACTCTGCTAGTCCTTGCAAAC
ATGTGGGGTGCACACTCCATCACACATTAAATAAAATAAAAAATCCTTAT
TAATTTTTTGAGCTAGGTGTCAATACCAAAGGGGAAGAAGACTGATTACA
AAACTTCATATGAAAATTTAGTTCTCTCAAATGAGGGCATTACTTATAGA
TCAATTTTCAAAATAAGAATAATATCATTTTTTGGTAAAATTTATTAAAG
GTAATTATTAGACTACTTAAAGCAGAATATTGAACAGGTTTCTGTTTCCA
TTGAACTCATAAAAATGCTGCACGCCGCACTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_o05.g1 MSMg01no180_o05.g1 CHROMAT_FILE:
MSMg01no180_o05.g1 PHD_FILE: MSMg01no180_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:14 2005
         (293 letters)



>mm_chr3_73792889_73793581
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 287/296 (96%), Gaps = 6/296 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtttacaaagatatcatcttcagagttgtaagccccaaaatgtgta--cccagaaa 58
           ||||||||||||||||||||||||||||| ||||||||||||||||||||     |||||
Sbjct: 493 acatgtttacaaagatatcatcttcagagctgtaagccccaaaatgtgtagt---agaaa 437

                                                                       
Query: 59  ttccagtaaatactaggaaaataacct-aaaaaaaaaaaaaacaaaaaaaagggaagaca 117
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 436 ttccagtaaatactaggaaaataacctaaaaaaaaaaaaaaaaaaaaaaaagggaagaca 377

                                                                       
Query: 118 gcgatttatcaattcctgatagataaggtactttatctgaactgaaaatagttgtcttca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcgatttatcaattcctgatagataaggtactttatctgaactgaaaatagttgtcttca 317

                                                                       
Query: 178 atacagatatgggcagatccaataatactatacacactaaacttaaaagtgttatatgca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 atacagatatgggcagatccaataatactatacacactaaacttaaaagtggtatatgca 257

                                                                   
Query: 238 gtgttgaaaaagattagtggttatgaatgtttgctgatcttccaagaggactgttg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtgttgaaaaagattagtggttatgaatgtttgctgatcttccaagaggactgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)