Query= MSMg01no180_o08.b1 MSMg01no180_o08.b1 CHROMAT_FILE:
MSMg01no180_o08.b1 PHD_FILE: MSMg01no180_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:15 2005
(577 letters)
>mm_chr3_3220039_3221015
Length = 977
Score = 658 bits (340), Expect = 0.0
Identities = 522/590 (88%), Gaps = 26/590 (4%)
Strand = Plus / Plus
Query: 1 atgatgtcacaaccctgaatttcctccacacttagtttctatgacattttctggacaaaa 60
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| | ||
Sbjct: 201 atgatgtcacaaacctgaatttcctcgacacttagtttctatgactttttctggagagaa 260
Query: 61 gtgtcctggcccgtacagtacaaagtcgaacaattctctgagtagggagtaaggctgatt 120
||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct: 261 gtgtcctggcccggccagtacaaagttgaacaatactctgagtagggagtagggctgatt 320
Query: 121 ctaga-aacga-tagaaaaatatgcaagaaacagataatggaagctctacaggtcattac 178
||||| || || | |||||||||||||| |||||||| || ||| ||| || ||||||||
Sbjct: 321 ctagagaa-gact-gaaaaatatgcaagcaacagatactgtaaggtctgcaagtcattac 378
Query: 179 cacagcagcagtaagtgtatttctcatggcatttt--aatactacatttctgtggaaatc 236
||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
Sbjct: 379 cacagcagcagtaagtgtatttctcatggcatttttaaat--tacagttctgtggaaggc 436
Query: 237 aaagccac-gtgctaacagatacaatttttgaaatcagatatctgttcccatgcaaaatc 295
|||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct: 437 aaagccacag-gctaacagaaacaatttttgaaatcagatatctgttcccttgcaaaacc 495
Query: 296 ctccctgttccttccaccaaggccaatagaatcattatccccttgccttaagccttaa-a 354
|||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||| || |
Sbjct: 496 ctccctgttctttctaccaagtccaatagaatcattatccccttgccttgagcct-aaca 554
Query: 355 tgcatctccttttattgttccatgcctcagatgt-cctggaaagctgccaacagaccctc 413
|||| | ||| ||||||||||||||||||||| | ||| |||| |||||||||||||||
Sbjct: 555 tgcaccgcctcttattgttccatgcctcagat-tgcctagaaatctgccaacagacccta 613
Query: 414 acttacctgacactacatggcaggcagacttttctctc------tctttttcccccctat 467
||||||||||| || | ||||||||||||||||||||| || |||||| ||
Sbjct: 614 acttacctgactctgcctggcaggcagacttttctctcccccactc-----cccccc-at 667
Query: 468 gcttcagagaattggcaaatggctcctgacagagaaataaacagatatgacatcagcaat 527
||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 668 gcttcagagaagtggcaaatggctcctgacagagaaataagcagataggacatcagcaat 727
Query: 528 ggatggaatgattctatccaaatctttgttggtgaaccaatgtcttcact 577
||| |||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 728 ggaaggaatgattctatccaaaactgtcttggtgaaccaatgtcttcact 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_o08.g1 MSMg01no180_o08.g1 CHROMAT_FILE:
MSMg01no180_o08.g1 PHD_FILE: MSMg01no180_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:15 2005
(298 letters)
>mm_chr1_90147601_90148291
Length = 691
Score = 472 bits (244), Expect = e-137
Identities = 279/294 (94%), Gaps = 7/294 (2%)
Strand = Plus / Plus
Query: 5 ttgctctgatcctaggtggtttgcccagagtttaacttcgacgacgttgtctctctcatc 64
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 205 ttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatc 264
Query: 65 cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgttacc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacc 324
Query: 125 tggatgggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 384
Query: 185 agcaggggatgcttggattggtactgggactgacctgtgtagcacacacatggagaatga 244
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 385 agcaggggatgcttgg-----tactgggactgacctgtgtagcacacac--ggagactga 437
Query: 245 ccacttccacccaaactaggagtgctaaatgggataaaacagagttctagaatg 298
||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 438 ccacttccatccaaaccaggagtgctaaaggggataaaacagagttctagaatg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 691
Length adjustment: 9
Effective length of query: 289
Effective length of database: 682
Effective search space: 197098
Effective search space used: 197098
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
