Query= MSMg01no181_b14.b1 MSMg01no181_b14.b1 CHROMAT_FILE:
MSMg01no181_b14.b1 PHD_FILE: MSMg01no181_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:30 2005
(307 letters)
>mm_chr3_28236388_28237094
Length = 707
Score = 571 bits (295), Expect = e-167
Identities = 304/307 (99%)
Strand = Plus / Minus
Query: 1 tgtgatataagtcagaagctctgctctaaaggaatggtccagcactgccttgcaagtgtc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgatataagtcagaagctctgatctaaaggaatggtccagcactgccttgcaagtgtc 252
Query: 61 attggttttatgttattactgtaaaggtccaagcaggtttgaatggtattttgcaatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 attggttttatgttattactgtaaaggtccaagcaggtttgaatggtattttgcaatccc 192
Query: 121 agccctctgaagatggagacaggtgatttcaaggaaagctggttagggaaacatgcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agccctctgaagatggagacaggtgatttcaaggaaagctggttagggaaacatgcagaa 132
Query: 181 atgatggtgagctctggctcagtgagagaccctgctgcagtaaataaagtgaagacactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atgatggtgagctctggctcagtgagagaccctgctgcagtaaataaagtgaagacactc 72
Query: 241 agtgtcacctccagccaacatacacacatacacacacacacatttatacacttatactta 300
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 71 agtgtcacctccagccaacatacacacatacacacaaacacatttatacacatatactta 12
Query: 301 tgcacat 307
|||||||
Sbjct: 11 tgcacat 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_b14.g1 MSMg01no181_b14.g1 CHROMAT_FILE:
MSMg01no181_b14.g1 PHD_FILE: MSMg01no181_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:30 2005
(321 letters)
>mm_chr3_28040021_28040741
Length = 721
Score = 518 bits (268), Expect = e-151
Identities = 306/322 (95%), Gaps = 6/322 (1%)
Strand = Plus / Plus
Query: 5 gaattcactataaccccccaaagtgcctgcaactccaacacttggcagggggatatagaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattcactataaccaggcaaagtgcctgcaactccaacacttggcagggggatatagaa 258
Query: 65 gggtcatcctactatatagtgaggtcaaggccagccagggctacctaggatcagcccccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gggtcatcctactatatagtgaggtcaaggccagccagggctacctaggatcagcccccc 318
Query: 125 cc------ccatttcatggaagagacagtagaggggtctgaggacacatgacagatcctc 178
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 cctcccccccatttcatggaagagacagtagagggggctgaggacacatgacagatcctc 378
Query: 179 tgtcactcacagtgacaacatttgaaacactaacataccaagtctcaagcatggatgcca 238
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 379 tgtcactcacagtgacaacatttgaaacactaacatgccaagtctcaggcatggatgcca 438
Query: 239 atagaacaacaaaagcctaaaagcatcaaatattcatggattattttagatttattttat 298
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 439 atagaacaacaaaagcctaaaagcatcaaatcttcatggattaatttatatttattttat 498
Query: 299 ctttcccttttaccatttatga 320
|||||| |||||||||||||||
Sbjct: 499 ctttcctttttaccatttatga 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
