Query= MSMg01no181_f13.b1 MSMg01no181_f13.b1 CHROMAT_FILE:
MSMg01no181_f13.b1 PHD_FILE: MSMg01no181_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:47 2005
(287 letters)
>mm_chr3_80977864_80978550
Length = 687
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 1 ttagaaaagcatagtaccaaaagaatactgagactactgctaatacttatccagtaag-a 59
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |
Sbjct: 487 ttagaaaagcatagtaccaaaagaatactgagaccactgctaatacttatcaagt-agaa 429
Query: 60 gccttctaccagctatcttttcgatgttgggaatagctgacaacatgcatttggatatta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccttctaccagctatcttttcgatgttgggaatagctgacaacatgcatttggatatta 369
Query: 120 gcttatgtattttctcataaatcactttgctattattccagctctttcttgcttcctagg 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 gcttatgtattttctcataaatcactttgctattattccagctcgttcttgcttcctagg 309
Query: 180 gtggacattgtgtctaacacatgctgagtaactgctccactactgaagaaaacatcccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtggacattgtgtctaacacatgctgagtaactgctccactactgaagaaaacatcccca 249
Query: 240 gctttacctaatgcacaactattttctttaacaactgcacttataaat 287
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctttacctaacgcacaactattttctttaacaactgcacttataaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no181_f13.g1 MSMg01no181_f13.g1 CHROMAT_FILE:
MSMg01no181_f13.g1 PHD_FILE: MSMg01no181_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:48 2005
(290 letters)
>mm_chr3_80821078_80821766
Length = 689
Score = 495 bits (256), Expect = e-144
Identities = 280/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 caggtgcctgtagacatgaccttattaagggagaggaagtttacctgcccttctggggga 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caggtgcctgtagacatgaccttattaagggagaggaagtttacctg-gcttctggggga 259
Query: 61 caaaaacatacggacgcaaggctacttggaccaggacgcaaacgggctggggctgggaag 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caaaaacatagggacgcaaggctacttggaccaggacgcaaacgggctggggctgggaag 319
Query: 121 cagtgctatttctgccgatttcaggatgagatttcgaggatttggacacctcttgactcc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 cagtgctatttctgccgatttcaggatgagatttcaaggatttggacacctcttgactcc 379
Query: 181 actcttgctccaggccagtcctttccaatcccatggctctctggccctgaataattatct 240
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 380 actcttgctccaggccagtcctctccaatcccatggctctctggccctgcataattttct 439
Query: 241 caggcctttccaagcagtggctgacaccgctgattgtgtgatctctgg 288
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 caggcctttccaagcagtggctgacactgctgattgtgtgatctctgg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
