Query= MSMg01no181_g17.b1 MSMg01no181_g17.b1 CHROMAT_FILE:
MSMg01no181_g17.b1 PHD_FILE: MSMg01no181_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:52 2005
(513 letters)
>mm_chr3_128889625_128890537
Length = 913
Score = 766 bits (396), Expect = 0.0
Identities = 485/552 (87%), Gaps = 59/552 (10%)
Strand = Plus / Plus
Query: 5 gaattctatcatatcagcttaacaatatacttcttttttgttttgtgatcatttgcatgt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcatatcagtttaacaatatacttcttttttgttttgtgatcatttgcatgt 264
Query: 65 gattaaaaatatccatgagctactctctctctgttggacaatagaatacaaaatatgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattaaaaatatccatgagctactctctctctgttggacaatagaatacaaaatatgctt 324
Query: 125 ggtgattatatctaagagacaaacaggtaatatttctgggacattataaaagaatgtatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgattatatctaagagacaaacaggtaatatttctgggacattataaaagaatgtatc 384
Query: 185 aagctgggcacggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggcaga 244
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctgggcgtggtggtgcacgcctttaatcccagcactcaggaggcagaggcaggcaga 444
Query: 245 tttctgagttcgaggccagcctggtctacaaagtgagt---------tccagggcagcca 295
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tttctgagttcgaggccagcctggtctacaaagtgagtaaagtgagttccagggcagcca 504
Query: 296 gggctacacggagaaaccctgtctcgg--------------------------------- 322
|||||||||||||||||||||||||||
Sbjct: 505 gggctacacggagaaaccctgtctcgggaaaaaaaaaaaaagcaaaaacaaaaaaaacaa 564
Query: 323 -------------aaaaaaaaaaaaaaatagaatgtaccagagtgaaacatgaataaaag 369
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 acaaaccaaaaaaaaaaaaaaaaaaaaatagaatgtaccagagtgaaacatgaacaaaag 624
Query: 370 agccaccactttcaactgaaaagaaaattacacacacacacacacacacacacacac--- 426
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctattactttcaactgaaaagaaaattacacacacacacacacacacacacacacaca 684
Query: 427 -tgaccatatgcaacactatgttttcaagtataagcataatgatcagatttttctggtta 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgaccatatgcaacactatgttttcaagtataagcataatgatcagatttttctggtta 744
Query: 486 gaatgtttaaat 497
||||||||||||
Sbjct: 745 gaatgtttaaat 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_g17.g1 MSMg01no181_g17.g1 CHROMAT_FILE:
MSMg01no181_g17.g1 PHD_FILE: MSMg01no181_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
(289 letters)
>mm_chr3_129033793_129034481
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 agtaatagtgaataattgtaaatacaatgccagttgtagagaatttattactgacaccgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489 agtaatagtgaataattgtaaatacaatgccagttgtagagaatttattaatgacaccgg 430
Query: 61 gataaatcgcaactgcatctgactctacacatccacacaaagtgcctcagaggtttatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gataaatcgcaactgcatctgactctacacatccacacaaagtgcctcagaggtttatga 370
Query: 121 atataagtatttgataaatttcaccactggtgttttggggctatatcacagtgatttcac 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 369 atataagtatttgataaatttcactactggtgttttggggctatatcacagtgatttcac 310
Query: 181 aagggatgacaatttcatttgcaatgacaattacattaagtgtcaattgttatttcgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagggatgacaatttcatttgcaatgacaattacattaagtgtcaattgttatttcgtgc 250
Query: 241 agtttactggagaagaatcgtaacgaaaattacaaaagatatgacgggt 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtttactggagaagaatcgtaacgaaaattacaaaagatatgacgggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
