MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-181J02
Chromosome	3 (Build37)
Map Location	58,605,865 - 58,606,420
singlet/doublet	singlet
Overlap gene	LOC100040293
Upstream gene	Rnf13, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2
Downstream gene	Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rnf13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24017 MGI:1346341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pfn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18645 MGI:97550
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433594 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433594 MGI:3643179
definition	note : predicted gene, EG433594 pseudo : _no_value

name	LOC100040216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	4921539H07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78256 MGI:1925506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Tsc22d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D3Ucla1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28146 MGI:92638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229317 MGI:1098684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810407C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69227 MGI:1916477
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932431H17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666680 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins pseudo : _no_value

name	LOC100040251 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins

name	Siah2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040293 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Clrn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC100040416 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins

name	Gpr171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229323 MGI:2442043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140795 MGI:2155705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gpr87 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:84111 MGI:1934133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74191 MGI:1921441
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70839 MGI:1918089
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Igsf10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242050 MGI:1923481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 71 ESTs, 1 Protein

name	EG666751 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666751 MGI:3648018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG666756 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666756 MGI:3648019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 224 ESTs, 4 Proteins pseudo : _no_value

name	EG229330 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229330 MGI:3644725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	EG435732 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435732 MGI:3644280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC433597 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins

name	LOC433598 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1082 ESTs, 7 Proteins pseudo : _no_value

name	LOC100040407 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Rnf13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86439981 GeneID:24017 MGI:1346341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 13 transcript_id : NM_011883.2

name	Pfn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980876 GeneID:18645 MGI:97550
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : profilin 2 transcript_id : NM_019410.2

name	LOC100040216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251160 GeneID:100040216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040216 transcript_id : XM_001474301.1

name	4921539H07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251162 GeneID:78256 MGI:1925506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4921539H07 gene transcript_id : XM_001474319.1

name	Tsc22d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487000 GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TSC22 domain family 2 transcript_id : NM_001081229.1

name	D3Ucla1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801749 GeneID:28146 MGI:92638
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 3, University of California at Los Angeles 1 transcript_id : NM_030685.2

name	Eif2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54020675 GeneID:229317 MGI:1098684
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 2a transcript_id : NM_001005509.1

name	2810407C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:143770877 GeneID:69227 MGI:1916477
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810407C02 gene transcript_id : NM_001040396.2

name	4932431H17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486918 GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932431H17 gene transcript_id : NM_001081262.1

name	LOC100040251 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251165 GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins product : similar to U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 2 transcript_id : XM_001474354.1

name	Siah2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130495 GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seven in absentia 2 transcript_id : NM_009174.3

name	LOC100040293 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251167 GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to LOC569648 protein transcript_id : XM_001474446.1

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533243 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153386.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533238 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153385.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533239 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153384.2

name	LOC100040416 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251176 GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins product : similar to ribosomal protein L13 transcript_id : XM_001474690.1

name	Gpr171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802624 GeneID:229323 MGI:2442043
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 171 transcript_id : NM_173398.2

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676311 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_001008497.1

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676314 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_133200.3

name	Gpr87 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14161701 GeneID:84111 MGI:1934133
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 87 transcript_id : NM_032399.1

name	P2ry13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803469 GeneID:74191 MGI:1921441
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled 13 transcript_id : NM_028808.2

name	P2ry12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980658 GeneID:70839 MGI:1918089
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled 12 transcript_id : NM_027571.2

name	Igsf10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369577 GeneID:242050 MGI:1923481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 71 ESTs, 1 Protein product : immunoglobulin superfamily, member 10, transcript variant 2 transcript_id : XM_887155.2

name	EG666751 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369578 GeneID:666751 MGI:3648018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666751 transcript_id : XM_985780.1

name	EG229330 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251171 GeneID:229330 MGI:3644725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG229330 transcript_id : XM_143256.6

name	EG435732 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251173 GeneID:435732 MGI:3644280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG435732 transcript_id : XM_888144.3

name	LOC433597 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94369583 GeneID:433597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to arylacetamide deacetylase-like 2 transcript_id : XM_485244.3

name	Rnf13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755338 GeneID:24017 MGI:1346341
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : ring finger protein 13 protein_id : NP_036013.1

name	Pfn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506971 CCDS:CCDS17364.1 GeneID:18645 MGI:97550
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : profilin II product : profilin 2 protein_id : NP_062283.1

name	LOC100040216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251161 GeneID:100040216
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474351.1

name	4921539H07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251163 GeneID:78256 MGI:1925506
definition	codon_start : 1 product : hypothetical protein LOC78256 protein_id : XP_001474369.1

name	Tsc22d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487001 GeneID:72033 MGI:1919283
definition	GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : TSC22 domain family 2 protein_id : NP_001074698.1

name	D3Ucla1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507609 GeneID:28146 MGI:92638
definition	codon_start : 1 note : ribosome associated membrane protein 4 product : stress-associated endoplasmic reticulum protein 1 protein_id : NP_109610.1

name	Eif2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54020676 CCDS:CCDS17367.1 GeneID:229317 MGI:1098684
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence ISS] GO_function : GO:0043022 - ribosome binding [Evidence ISS]; GO:0003743 - translation initiation factor activity [Evidence IEA] [Evidence ISS]; GO:0000049 - tRNA binding [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA]; GO:0006417 - regulation of protein biosynthesis [Evidence ISS]; GO:0042255 - ribosome assembly [Evidence ISS] codon_start : 1 product : eukaryotic translation initiation factor 2A protein_id : NP_001005509.1

name	2810407C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:143770878 GeneID:69227 MGI:1916477
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008430 - selenium binding [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0001514 - selenocysteine incorporation [Evidence ISS] codon_start : 1 product : selenoprotein T protein_id : NP_001035486.2 transl_except : (pos:58389160..58389162,aa:Sec)

name	4932431H17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486919 GeneID:545527 MGI:3588212
definition	codon_start : 1 product : hypothetical protein LOC545527 protein_id : NP_001074731.1

name	LOC100040251 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251166 GeneID:100040251
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474404.1

name	Siah2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254613 CCDS:CCDS17368.1 GeneID:20439 MGI:108062
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : seven in absentia 2 protein_id : NP_033200.2

name	LOC100040293 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251168 GeneID:100040293
definition	codon_start : 1 product : similar to LOC569648 protein protein_id : XP_001474496.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415402 CCDS:CCDS17369.1 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 3 protein_id : NP_700435.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415398 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 2 protein_id : NP_700434.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510293 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 1 protein_id : NP_700433.1

name	LOC100040416 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251177 GeneID:100040416
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474740.1

name	Gpr171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734176 CCDS:CCDS17370.1 GeneID:229323 MGI:2442043
definition	GO_function : GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 171 protein_id : NP_775574.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56676312 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_001008497.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469033 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_573463.1

name	Gpr87 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14161702 GeneID:84111 MGI:1934133
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 87 protein_id : NP_115775.1

name	P2ry13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229197 CCDS:CCDS17372.1 GeneID:74191 MGI:1921441
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : G protein-coupled receptor 68; G protein-coupled receptor 86; Vpurinergic receptor P2Y, G-protein coupled 13 product : purinergic receptor P2Y13 protein_id : NP_083084.1

name	P2ry12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980659 CCDS:CCDS17373.1 GeneID:70839 MGI:1918089
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001609 - adenosine receptor activity, G-protein coupled [Evidence IMP]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001621 - platelet ADP receptor activity [Evidence IMP]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : purinergic receptor P2Y12 protein_id : NP_081847.2

name	Igsf10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82889532 GeneID:242050 MGI:1923481
definition	codon_start : 1 product : immunoglobulin superfamily, member 10 isoform 2 protein_id : XP_892248.1

name	EG666751 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369579 GeneID:666751 MGI:3648018
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990874.1

name	EG229330 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251172 GeneID:229330 MGI:3644725
definition	codon_start : 1 product : hypothetical protein protein_id : XP_143256.5

name	EG435732 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251174 GeneID:435732 MGI:3644280
definition	codon_start : 1 product : hypothetical protein protein_id : XP_893237.3

name	LOC433597 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51708106 GeneID:433597
definition	codon_start : 1 product : similar to arylacetamide deacetylase-like 2 protein_id : XP_485244.1

name	LOC666680 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251169 GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins product : similar to Spermine synthase pseudo : _no_value transcript_id : XR_031838.1

name	EG666756 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149251170 GeneID:666756 MGI:3648019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 224 ESTs, 4 Proteins product : predicted gene, EG666756 pseudo : _no_value transcript_id : XR_031813.1

name	LOC433598 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251187 GeneID:433598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1082 ESTs, 7 Proteins product : similar to HSPC008 pseudo : _no_value transcript_id : XR_031993.1

name	LOC100040407 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251175 GeneID:100040407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical protein LOC100040407 pseudo : _no_value transcript_id : XR_031847.1

clone name	MSMg01-469K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-540F13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-066M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329M03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-457L14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-329N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237G17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-237O11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-274C21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392G10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388D08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-158D06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-537K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-545P09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-063C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520N19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-416J18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-364M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452F21
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-255G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067A08
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-181J02.T7 (MSMg01no181_j02.b1)	MSMg01-181J02.TJ (MSMg01no181_j02.g1)
ACC	AG374708	AG374709
length	775	727
length of high quality (start - end)	249 (77 - 325)	661 (47 - 707)
definition	CHROMAT_FILE: MSMg01no181_j02.b1 PHD_FILE: MSMg01no181_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:03 2005	CHROMAT_FILE: MSMg01no181_j02.g1 PHD_FILE: MSMg01no181_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:03 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXAAATAACAACACACTAGGTGTCAACAAACCAAAT AATCCAATTTTTCAAAATGTGATCCCGATCTAAACAGAGAATTCTCAACG GGGGAAACGTAAAGTGGCAGAGAAACACCTTAAGAAATGTTTGGCATCCT TAGCCATCAGGGGAATATAAATCAAAATGACTTTGAGATTCTATTTTCTG CCTGTCATAATGGCTGAGTTCAGTAACAGCCTCATGCCGGTGAGGATGTG GAATAAGAGGAGCACCCATGTTTTGGTGGGTTGGAGTGCGAATTCACACA GCTGCAGGGGTAATTTTTGTGCCCCCCCCCCCCAGGAAGATGGGGACCCA CCTCAAGACTCTGTTCTACCACTCTTGAAAAAATATACAAAGGTTGTTTT CTCCTACCGCCCTTTTTTTTCGTTAATATAGGTTCATAATTCCCAGATGT GTCCCTAAACACAACTGCATTTTGTCCCCTGTTCCCCCCTTTTTTTTTCC CCACCCCCCCTTTATTTTTTATACCCGTATTGTCCCCCCGCCCCCCCCCC CCCCCCTCCCCCTTATTTTTCACCCCCCCCCCCCCCCCCCCTTTTTTTTT TTTATAATAGGCAGCACGCCACCCACCCCGGTTGTGTGCCCTTTTTTTTT TTTTTCTCATCCCCCCCCCCCCTGCCGAGGCGGGGAAGTAGTATAATTGG GCTACCTCCCTTTCCGATAAATACG	TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCAATGGCTGCAAAGAACCCCCACTACATGAATAGTAAAGGCTAAA CTTTGGTACATCCTGGATGAGAACAGATGGGTTGTGAGCATAAAGTCCCT AATCACATTTTCTAGAAATTTGGGAGGTTACATTGGACGTACTACGTGGA ATAAATAAAATTCGGGCATATGTAAGGGTTATTTTTATTTATCTTGCTTT TCTGGTAGCCATACATAAGTCACTGCATGCCTATGGTCTCATATTCTGTA TCTCTCAGAACTCAGCAATGTGCCAAGATTCTGTTTGTCTAGTTCTGTTT GCCGGGTTGATGTCACTGCTAACCAGTATTTATCATTTGTGTTATTATAC AACAGCGATTCTCAACCTGTGAAACATGACCCCTGGAGGGGGGATGGTCA AATGACCCTTTCACAGGGTGCGTTTAACAGCAGCAGAAAACACAGATATT TACATTGTGATTCATAACAGTAGCAAAATTATAGTTATAAAGTAGCAACC ACCGCAACAAAAAAAGTGTACGGTTGGGAGTTGCCACAACATCAGGAATT GTATTAAAGGTTGGCAGTATTAGGAAGGTTGAGAACCACTGGTCTAGAAT AATCAGCATGTGTCACATGTGGTCCACATAGGGCTCATTTTTGTACCTCG ACCCAGATCCTTCTAAGTGCTGCTGAG
quality values	Open. Hide. 0 3 6 8 10 8 6 6 8 8 8 9 6 10 14 19 32 41 33 50 50 50 48 50 50 42 47 30 25 23 7 6 6 6 6 6 6 6 6 6 6 6 12 12 11 18 23 31 20 19 19 29 28 50 42 30 25 20 8 6 6 6 6 6 6 6 6 8 8 8 8 10 10 9 9 10 16 24 32 33 33 53 53 57 57 57 57 57 57 57 57 57 57 43 43 43 42 43 43 57 53 53 42 38 36 38 36 36 53 53 31 31 31 29 28 23 27 17 11 10 10 9 10 11 15 15 15 34 34 39 41 59 37 37 41 41 47 47 36 50 36 36 36 37 43 43 43 48 57 59 59 57 57 53 50 51 50 54 54 54 54 54 54 54 54 54 54 57 57 50 53 68 51 51 50 54 54 57 57 57 57 57 68 68 50 51 50 50 50 50 68 68 68 68 57 59 59 59 68 59 59 59 57 57 57 57 57 57 59 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 54 50 68 68 68 50 57 59 59 59 59 53 53 53 50 50 50 57 57 57 57 57 53 53 50 50 50 50 41 30 19 12 15 12 13 12 12 20 15 32 32 59 59 59 59 59 59 59 59 59 57 53 53 48 48 48 48 48 48 48 57 57 48 48 54 54 48 51 48 43 48 37 37 23 23 23 34 34 50 57 57 57 39 39 33 33 37 35 59 59 59 59 59 28 22 15 7 6 7 6 6 6 6 6 6 6 9 11 11 11 18 21 19 10 10 9 15 18 21 30 28 43 39 43 32 37 30 28 28 34 24 18 9 9 7 7 8 9 9 9 10 10 23 12 10 10 10 9 12 18 11 11 11 25 26 30 24 24 15 12 12 12 23 18 23 23 28 21 14 10 13 8 8 8 8 16 24 26 35 22 21 14 14 19 12 12 12 12 12 12 11 18 18 29 29 23 18 18 18 18 15 11 10 9 9 9 13 18 12 10 9 9 9 9 9 13 12 11 11 12 12 13 12 18 11 9 9 9 12 12 15 15 15 12 12 11 12 12 12 10 11 11 11 14 20 28 19 13 10 11 10 10 10 8 8 8 8 8 8 11 12 13 13 15 13 11 9 8 8 6 6 8 10 10 10 10 8 8 8 8 10 15 14 14 8 8 6 6 6 8 10 10 8 8 8 8 8 8 8 8 8 10 9 9 9 8 10 10 10 10 10 12 10 9 8 8 11 10 10 10 10 13 16 13 13 14 10 8 6 6 8 8 14 16 18 15 8 8 8 6 8 12 12 15 15 8 9 8 8 8 8 6 6 8 8 8 7 6 8 8 9 9 8 8 8 9 9 15 16 27 22 19 18 22 24 21 19 19 18 20 29 25 22 13 15 9 9 12 8 8 9 9 9 12 10 8 8 8 8 8 13 28 27 25 25 21 14 9 10 10 10 14 9 9 9 10 11 11 12 17 17 25 27 32 25 25 23 15 10 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 12 14 9 6 8 6 6 6 8 11 14 13 13 15 17 11 11 9 10 10 14 15 22 31 34 39 37 30 30 24 24 16 17 17 17 8 8 8 8 8 8 9 12 11 13 15 17 22 25 19 11 14 6 6 6 7 8 8 12 15 13 15 10 11 11 11 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 10 10 10 12 7 7 8 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8	Open. Hide. 8 8 8 8 8 9 10 19 24 37 41 33 32 32 28 28 30 30 30 30 33 37 37 37 43 48 31 28 30 30 30 35 44 44 43 43 36 43 43 43 44 42 42 34 36 36 42 43 68 68 47 47 47 47 50 50 50 50 50 68 68 59 48 48 39 39 37 39 42 46 57 57 57 57 57 57 57 57 50 50 47 46 48 48 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 50 57 57 57 57 59 57 51 51 50 50 50 57 57 57 57 44 43 37 32 32 21 21 38 44 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 52 52 52 62 62 62 62 62 45 45 45 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 52 57 57 57 57 59 59 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 52 38 38 18 33 32 44 44 54 54 57 59 59 59 52 52 50 57 57 57 59 59 59 59 59 68 68 68 68 68 57 57 48 48 48 48 48 48 59 59 57 44 42 42 42 43 57 59 57 68 68 68 57 57 57 54 54 54 57 54 59 59 59 59 48 48 48 57 57 54 54 54 54 54 57 59 59 59 59 59 57 57 57 57 57 50 57 57 57 57 57 59 59 59 59 59 59 57 48 47 47 48 48 48 46 46 46 41 39 25 25 12 12 12 25 27 47 47 47 47 48 48 48 48 57 48 57 57 59 59 59 48 48 48 59 48 43 43 43 43 43 47 47 47 39 36 36 37 43 37 37 41 28 28 11 11 12 25 19 36 37 37 32 29 29 37 41 37 39 43 43 32 32 32 20 18 24 32 37 37 37 37 37 37 36 32 28 27 24 25 32 20 23 19 22 22 23 28 36 36 37 33 33 34 34 31 24 24 34 34 37 37 28 25 25 25 25 34 34 47 37 36 35 24 27 24 24 28 28 25 21 26 21 20 25 33 37 37 39 40 46 46 59 59 48 37 37 36 37 37 33 37 37 32 29 27 26 30 21 21 21 14 14 15 18 14 14 15 21 28 34 25 22 15 14 14 17 19 17 15

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no181_j02.g1 MSMg01no181_j02.g1 CHROMAT_FILE:
MSMg01no181_j02.g1 PHD_FILE: MSMg01no181_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:03 2005
         (661 letters)



>mm_chr3_58605865_58606925
          Length = 1061

 Score = 1013 bits (524), Expect = 0.0
 Identities = 548/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatggctgcaaagaacccccactacatgaatagtaaaggctaaactttggtaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcaatggctgcaaagaacccccactacatgaatagtaaaggctaaactttggtaca 497

                                                                       
Query: 65  tcctggatgagaacagatgggttgtgagcataaagtccctaatcacattttctagaaatt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcctggatgagaacaaatgggttgtgagcataaagtccctaatcacattttctagaaatt 437

                                                                       
Query: 125 tgggaggttacattggacgtactacgtggaataaataaaattcgggcatatgtaagggtt 184
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 tgggaggttacattggacgtgctacatggaataaataaaattcgggcatatgtaagggtt 377

                                                                       
Query: 185 atttttatttatcttgcttttctggtagccatacataagtcactgcatgcctatggtctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atttttatttatcttgcttttctggtagccatacataagtcactgcatgcctatggtctc 317

                                                                       
Query: 245 atattctgtatctctcagaactcagcaatgtgccaagattctgtttgtctagttctgttt 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atattctgtatctctcagaattcagcaatgtgccaagattctgtttgtctagttctgttt 257

                                                                       
Query: 305 gccgggttgatgtcactgctaaccagtatttatcatttgtgttattatacaacagcgatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gccgggttgatgtcactgctaaccagtatttatcatttgtgttattatacaacagcgatt 197

                                                                       
Query: 365 ctcaacctgtgaaacatgacccctggaggggggatggtcaaatgaccctttcacagggtg 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 196 ctcaacctgtgaaacatgacccctggaggggggatggtcaaatgatcctttcacagggtg 137

                                                                       
Query: 425 cgtttaacagcagcagaaaacacagatatttacattgtgattcataacagtagcaaaatt 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136 cgtttaacagcagcagaaaacacagatatttacattatgattcataacagtagcaaaatt 77

                                                                       
Query: 485 atagttataaagtagcaaccaccgcaacaaaaaaagtgtacggttgggagttgccacaac 544
           ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 76  atacttataaagtagcaaccaccgcaacaaaaaaagtgtatggttgggagttgccacaac 17

                           
Query: 545 atcaggaattgtatta 560
           ||||||||||||||||
Sbjct: 16  atcaggaattgtatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information