BAC Information

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BAC

Clone NameMSMg01-181P06
Chromosome3 (Build37)
Map Location 76,622,219 - 76,622,532
singlet/doubletsinglet
Overlap genenone
Upstream geneGolph4, Fstl5
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181P06.T7 (MSMg01no181_p06.b1)MSMg01-181P06.TJ (MSMg01no181_p06.g1)
ACCAG374972AG374973
length869789
length of high quality
(start - end)
245 (76 - 320)318 (44 - 361)
definitionCHROMAT_FILE: MSMg01no181_p06.b1 PHD_FILE: MSMg01no181_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:33 2005CHROMAT_FILE: MSMg01no181_p06.g1 PHD_FILE: MSMg01no181_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGACATCCAGGAGTTCTGTTTTT
ATTCAATACTGTTTTAACTACTATAAGCTTGTTCTTGTTGTTGTTTTTCC
ATATTATGTTTTGAATTGTCTTTTCAAGGACAGCAAAGAATTTTGTTCAA
ATTTGGTTGGAAACTGCTTTGCATATGTATTAGGTTGCTTTTATTAGGAT
GGCAATTTTTTACTATGTTAATCCTACATATATTCATGACCATCTTTCTA
TTTCAAAAAAAAATACACACTTTTTTTATTTACTATTCACACACACTCAC
ACACTTCTCTCATTCTTAGATCGTTCTCCCCCTCTCCCCCCCTTTTATTA
ATCTTATCTTTCTCGTGATTTCCATATCTTTACCACCAAAATATAAATAA
CAACTATCTCCCCCCCTTTGTTATTTTTTATTTCCCCCCCATTTTTTTTT
TTTTACTTTTTTTTTATTTATCTTTTTCCCTTTTTGTCCCTGTACCTTCA
TTACTACCCACATTACAATTTTTTTTACCCCTATTATCACCCCCCTTTTT
TTTTTCTTCCCCCTCCCTCCCCCCTTTTTTTTTTTTTTTTCTCCCTCTTT
TTTTACCCCCACCCTCTCCCCTCCCACTTCCATATCCTCTTTTTTTTTCC
CACACCCCCCTCCCTCCCCCCTCCCCTTCTTTTTTTTTATATTCCTCCCT
CCTCCTCCCCCACCCCTAATTTTTTTTATCCTTGTTTATTTTCCCCCCTA
CCCCCCCCCCCCCCACTATTATATCACAACCTTCTTTATTTTTTCACTCT
TCTCTCTTTCTTATAATAT
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTTAATATTTTCTATGAAAGAGGGATATTAAATTTGACTGATAC
AGCAGGGGAATGTTGTCCTGCCCTGTTAGTTGTAAGCTAGACAAAGGCCC
ATTAGGAGAACTCAGCATGTCTTTTTGAAATAATGCTTGTTGTTTATTCT
AAACTCTGCACATGATTTTGTCTTTACCCTGCACATCCCTAAGTCTTATC
AGTTGCAATGATTGACAGTGTTCAGTACTCAATGGAAGGGGTTGTATGAC
TTTCTTTTGTTTCAAGAACACTTTTTCCAGCACTGGAGTTAATAGAACCA
CTCCTTGTATTATTTAAAGCCCTCCACCCACTATTATATACTAACTGTTT
CTCAGTAATATAAACCCCCCGTGTTTCCTTTTGTAATTTGATAGTATAAT
ACTACAGATCCTAATTGCTTTTTGAAGTTGATGTTTGTTATTTTTTTTAT
AAATTTTAAAAATAATCTTCACTAATTAATTTTTTATTTTTCTTCCTACA
CCTCATCTTTTCTAAATTTTTCCCTCTCCACCCCCTAATTTTTTTCATTT
TCAAATCTCCCCTTATCTCCACTACTTTTTTTATCATCCCTTATCTTTCT
TTCTTCTTTTATTCCCCCTTTTTTTTTTATCATTTTCCCCCCCCCACGCC
TCTCTTCTTTTTTTTTTTTTTTTTTTCCCCCCCCCTTCTTCTTATTATAT
TCCTCCCCCCACTCTCACTCGCCCTCCCTTTTATATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_p06.g1 MSMg01no181_p06.g1 CHROMAT_FILE:
MSMg01no181_p06.g1 PHD_FILE: MSMg01no181_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:33 2005
         (318 letters)



>mm_chr3_76622015_76622732
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttaatattttctatgaaagagggatattaaatttgactgatacagcaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttttaatattttctatgaaagagggatattaaatttgactgatacagcaggg 264

                                                                       
Query: 65  gaatgttgtcctgccctgttagttgtaagctagacaaaggcccattaggagaactcagca 124
           ||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 gaatgctgtcctgggctgttagttgtaagctagacaaagacccattaggagaactcagca 324

                                                                       
Query: 125 tgtctttttgaaataatgcttgttgtttattctaaactctgcacatgattttgtctttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctttttgaaataatgcttgttgtttattctaaactctgcacatgattttgtctttac 384

                                                                       
Query: 185 cctgcacatccctaagtcttatcagttgcaatgattgacagtgttcagtactcaatggaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgcatatccctaagtcttatcagttgcaatgattgacagtgttcagtactcaatggaa 444

                                                                       
Query: 245 ggggttgtatgactttcttttgtttcaagaacactttttccagcactggagttaatagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggttgtatgactttcttttgtttcaagaacactttttccagcactggagttaatagaa 504

                         
Query: 305 ccactccttgtatt 318
           ||||||||||||||
Sbjct: 505 ccactccttgtatt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)