Query= MSMg01no182_a23.b1 MSMg01no182_a23.b1 CHROMAT_FILE:
MSMg01no182_a23.b1 PHD_FILE: MSMg01no182_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:42 2005
(473 letters)
>mm_chr3_119451725_119452597
Length = 873
Score = 814 bits (421), Expect = 0.0
Identities = 431/435 (99%), Gaps = 2/435 (0%)
Strand = Plus / Minus
Query: 35 aattggtagaatcatttttgaaatatatctcaagttgagcatatgcatgctgtatactta 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aattggtagaatcatttttgaaatatatctcaagttgagcatatgcatgctgtatactta 814
Query: 95 ataattcccctcctaattgcatgcttgagaaagcatatatatgtgaataaaaagatatgc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ataattcccctcctaattgcatgcttgagaaagcatatatatgtgaataaaaagatatgc 754
Query: 155 aaaaaaaaaaacaaattccagggagcaactgttacattctaggagtttaaagctagaaat 214
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 --aaaaaaaaccaaattccagggagcaactgttacattctaggagtttaaagctagaaat 696
Query: 215 gacccaagtgtgcagcaataagagaagttgtggaatatctgtagccaaaaaggactgaat 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gacccaagtgtgcagcaataagagaagttgtggaatatctgtagccaaaaaggactgaac 636
Query: 275 aagctctgtgtatttgtaaagcataagtgtacatcctaaaacggtatttcttgaaagcca 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aagctctgtgtatttgtaaagcataagtgtacatcctaaaacggtatttcttgaaagcca 576
Query: 335 gaccaaagtagaccatagatgttacagttccatttctttatctgggagagggcgtggttc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaccaaagtagaccatagatgttacagttccatttctttatctgggagagggcgtggttc 516
Query: 395 tggtttctggtacattggtagtgttacaggtctttgttttggatagtgttacaggttttt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggtttctggtacattggtagtgttacaggtctttgttttggatagtgttacaggttttt 456
Query: 455 gttttgtttgttggg 469
|||||||||||||||
Sbjct: 455 gttttgtttgttggg 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_a23.g1 MSMg01no182_a23.g1 CHROMAT_FILE:
MSMg01no182_a23.g1 PHD_FILE: MSMg01no182_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:42 2005
(621 letters)
>mm_chr3_119289475_119290496
Length = 1022
Score = 1143 bits (591), Expect = 0.0
Identities = 615/623 (98%), Gaps = 2/623 (0%)
Strand = Plus / Plus
Query: 1 tctgaagactaagaattaaactttttgaaagatctgtgaccagtgtctaatcattcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagactaagaattaaactttttgaaagatctgtgaccagtgtctaatcattcagga 260
Query: 61 tatagttacatacatgactgatatagtgatagagctcaccttagggtacagtttgttcct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagttacatacatgactgatatattgatagagctcaccttagggtacagtttgttcct 320
Query: 121 agtaaccatttcattcagatgtaacccaaaccaagcaagtatattttttacaaaacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaccatttcattcagatgtaacccaaaccaagcaagtatattttttacaaaacaaaa 380
Query: 181 cacttatttcttcatttcctcatatgaaaatatattgctgtgtgaacaaatgaaacatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttatttcttcatttcctcatatgaaaatatattgctgtgtgaacaaatgaaacatgt 440
Query: 241 aatttttgagattttttt-attacttttctttttttacagtccagtccttgccctgctac 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttttgagattttttttattacttttctttttttacagtccagtccttgccctgctac 500
Query: 300 ccatctaccctcccacagttcctcatcctagtcctcctcccccttgtttccaaggtgatg 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ccatctaccctcccacagttcctcatcctagtcctcctcacccttgtttccaaggtgatg 560
Query: 360 cccctccatcaccaggcatccccactccctggggcctcaagtctcttgagatttagttgc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 cccctccatcaccaggcatccccactccctggggcctcaagtctcttgagatttaggtgc 620
Query: 420 ctcttttcccactgagac-agacaaggccgtcctctgctgtgtatgtgttgcaggactcg 478
|||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||
Sbjct: 621 ctcttttcccactgagaccagaccaggcagtcctctgctatgtatgtgttgcaggactcg 680
Query: 479 ggggagggagctgggacaagctcatgtatactgcctggttggtggctcagtctctgagat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggagggagctgggacaagctcatgtatactgcctggttggtggctcagtctctgagat 740
Query: 539 atctaagtggtccaggttatttgaaacttctggtcttctgatagggtcaccctcctcctc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctaagtggtccaggttatttgaaacttctggtcttctgatagggtcaccctcctcctc 800
Query: 599 agcttcttccagcctttttctaa 621
|||||||||||||||||||||||
Sbjct: 801 agcttcttccagcctttttctaa 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
