Query= MSMg01no182_b03.b1 MSMg01no182_b03.b1 CHROMAT_FILE:
MSMg01no182_b03.b1 PHD_FILE: MSMg01no182_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:43 2005
(656 letters)
>mm_chr3_118980656_118981711
Length = 1056
Score = 1145 bits (592), Expect = 0.0
Identities = 630/652 (96%), Gaps = 16/652 (2%)
Strand = Plus / Plus
Query: 5 gaattccatgtctttgaaatccttgttttttcatcttatttgacagcctttcattataat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtctttgaaatccttgttttttcatcttatttgacagcctttcattataat 264
Query: 65 atgcaaatcagagctattaagagactagatgaaaattatcagtaagttccaggtactaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcaaatcagagctattaagagactagatgaaaattatcagtaagttccaggtactaaa 324
Query: 125 atttataaatacatcttggttaaattatattctcaaactcattgcaatttctttggtagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttataaatacatcttggttaaattatattctcaaactcattgcaatttctttggtagg 384
Query: 185 ctatattacagctttggagcttgcttctgttaccagtcatttgttcatgaacaatacaat 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 ctatattacagctttggagcttgcttctgttaccaatcatttgttcatgaacaatacaat 444
Query: 245 aaagttaatcctttcattaagaaatttgtagagaggttcttaatacactaattttaaatt 304
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 aaagttaatccttccattaagaaatttgtagagaggttcttaatatactaattttaaatt 504
Query: 305 actttaatttttgtaatttattctatcatttctatctgtctgtctgtctatctatctgtc 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 actttaatttttgtaatttattctatcatttctatctgtctgtct----atctatct--- 557
Query: 365 tatctgtctatctatctatctatctatctatctatctatctatctatcatctatctgtgt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ---------atctatctatctatctatctatctatctatctatctatcatctatctgtgt 608
Query: 425 atctgtgtttgtagtatatgtgtagacccaaggaactggtctccactctaactttgaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atctgtgtttgtagtatatgtgtagacccaaggaactggtctccactctaactttgaaac 668
Query: 485 agactctcactgaacatatagctcatttatagccaagaccagctagccatcatgctcctg 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 669 agactctcactgaacatatagctcattgatagccaagaccagctagccatcatgctcctg 728
Query: 545 tgttccagggatcttctgtcttccctccaacactgggaccacagagctcctcctccaata 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 729 tgttccagggatcttctgtcttccctccaacactggggccacagagctcctcctccaata 788
Query: 605 ttttacctgggtgcttgtaaaccaaactcagtcttctcttcgtgcttgcaca 656
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 789 ttttacctgggtgcttgtaaaccaaactcagtcttctcttcatgcttgcaca 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_b03.g1 MSMg01no182_b03.g1 CHROMAT_FILE:
MSMg01no182_b03.g1 PHD_FILE: MSMg01no182_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:43 2005
(283 letters)
>mm_chr3_119089376_119090058
Length = 683
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%)
Strand = Plus / Minus
Query: 1 catgcatctgagtatgtatttaggggttgaagcctacatattagtaccgtcagacccttt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 483 catgcatctgagtatgtatttaggggttgaagcctacatattagtaaagtcagacccttt 424
Query: 61 aattatgattgcttctcggagagagtgttaattgctggacatgactgtgttttctggttt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aattatgaatgcttctcggagagagtgttaattgctggacatgactgtgttttctggttt 364
Query: 121 catttctccttctccactctgttttagaactggagaataagccatatctagcaccatagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 catttctccttctccactctgttttagaactggagaataagccatatctagcaccatagt 304
Query: 181 gtccctagtgcccaggagttgagttgtgtggacagtggacccacaaagaggtggcgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtccctagtgcccaggagttgagttgtgtggacagtggacccacaaagaggtggcgtctg 244
Query: 241 tttgcatctcctgtaggagtttcatgggagcatttcttcagat 283
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 243 tttgcatctcctgtaggagtttcatgggagcgtttcttcagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
