BAC Information

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BAC

Clone NameMSMg01-182E12
Chromosome3 (Build37)
Map Location 89,040,299 - 89,040,637
singlet/doubletsinglet
Overlap geneTrim46
Upstream geneRhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1
Downstream geneKrtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182E12.T7 (MSMg01no182_e12.b1)MSMg01-182E12.TJ (MSMg01no182_e12.g1)
ACCAG375210AG375211
length739729
length of high quality
(start - end)		360 (45 - 404)345 (76 - 420)
definitionCHROMAT_FILE: MSMg01no182_e12.b1 PHD_FILE: MSMg01no182_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:59 2005CHROMAT_FILE: MSMg01no182_e12.g1 PHD_FILE: MSMg01no182_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACATCCCTGGTTGGCTCCTGCAGCTCCTCCTTCTCCCCCAGTCA
TAGCAATTGACCTTCCTCACTTCTAGTTCCTAGGCCACACAAATCCAAAG
GTCCTGCCTCAGTCTACCTACCCAACCATTGGCCATTGGCTCTTTATTGA
TTGATGATAAACCAATTGGAGACAAGGACCTTTGGTGTTTAGACACACAG
ATTCCCGATTTTGGGGGCTGGATTAATTCAAAGCTAAATTAGAGCACATC
CGTAGCAATGTTGTATGTATATATATATATACATGTCATAACATGCATGT
GAAGGCCTAAGTTCTGTCCTCCTGGCTTGTGGGTCCCTAGGGTCAAAGTC
AGGTCCCCCCCCCTTAGCAGCAAGTACCTTTACTTGGTGAGCCATCTCAT
CAGCCTGACAGTAATTTTATTTTTTCTATCAGAGTATATAATCATAAATA
TTCTGGGGTCGAAAAAAAGCCAGGTATGCTGCTACACGCCTCTTAATCTC
AGCACTTGCTGAATTTTATTAAGGCCCACTTTCTGTGTTTGATTCTCTAT
CTGTTTCCACTCACTTACATTCCCCCCCTCCCTTCATCTTACTGCCAATA
CATCTTTGTTTCTTACCACCTTGCATTACAGCTCATCATACTCTCTTCCC
GCTTTATATTCTTTTTCCCCGACCTCCCTTTTACCCCTG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGACAATTTGTTCCCTGTGCCCA
AAATTCCCAGTGTTTGTGCTGACACCCCACAGTCCCCAGTACCAGTGTGT
CCCTGAAGTCCTTCCTTCTGTCTCAACTTCCTGCTTCCAGTCCTGCACTT
CTTCCTTGATGGCCGCTGGGGTGCGAGCCGAGAGCGGCTAGCCATCAGCA
AGGACCAGCGAGCGGTGCGGAGTATCCCAGGGCTTCCCTTGCTGCTGGCT
GCTGAGCGGCTGCTCACGGGCTGCCACCTGAGTGTGGACGTGGTCTTGGG
TGATGTGGTTGTGACCCAGGGCCGCAGCTACTGGGCCTGTGCGGTAGACC
CTGCCTCCTACTTGCCCAAGGTGGGCGTCGGGCTGGAGAGCAAACTTCAG
GAAAGCTTCCAGGGTGCCCCGGATGTGATCAGCCCCAGGTCAGGCCCTTC
TGCAAGAGGGGGTGGGGGAAATGAACCCCCGTGAAAGAATCTGCCCCCGT
TGAGTCTGATTACTTCCCATTTCCTCTCCCCCCTTTCCCCCTCTCTTTTC
TCCTCCTCCTTTCCCTTTTTCACCCCTTTATTGTAATTTTCTCCCCCTCC
GTTAAATTTCTCTCCCTTTTTCTCCAATGTCTCAAATCCACATTATACTT
ACTCCCCCTTCCTCCCCACTTTTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_e12.g1 MSMg01no182_e12.g1 CHROMAT_FILE:
MSMg01no182_e12.g1 PHD_FILE: MSMg01no182_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:59 2005
         (345 letters)



>mm_chr3_89040099_89040843
          Length = 745

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgacaatttgttccctgtgcccaaaattcccagtgtttgtgctgacaccccacagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttgacaatttgttccctgtgcccaaaattcccagtgtttgtgctgacaccccacagtcc 480

                                                                       
Query: 61  ccagtaccagtgtgtccctgaagtccttccttctgtctcaacttcctgcttccagtcctg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccagtaccagtctgtccctgaagtccttccttctgtctcaacttcctgcttccagtcctg 420

                                                                       
Query: 121 cacttcttccttgatggccgctggggtgcgagccgagagcggctagccatcagcaaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cacttcttccttgatggccgctggggtgcgagccgagagcggctagccatcagcaaggac 360

                                                                       
Query: 181 cagcgagcggtgcggagtatcccagggcttcccttgctgctggctgctgagcggctgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cagcgagcggtgcggagtatcccagggcttcccttgctgctggctgctgagcggctgctc 300

                                                                       
Query: 241 acgggctgccacctgagtgtggacgtggtcttgggtgatgtggttgtgacccagggccgc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 299 acgggctgccacctgagtgtggacgtggtcttgggtgatgtggctgtgacccagggccgc 240

                                                  
Query: 301 agctactgggcctgtgcggtagaccctgcctcctacttg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agctactgggcctgtgcggtagaccctgcctcctacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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