BAC Information

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BAC

Clone NameMSMg01-182H14
Chromosome3 (Build37)
Map Location 151,683,539 - 151,683,767
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597
Downstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H14.T7 (MSMg01no182_h14.b1)MSMg01-182H14.TJ (MSMg01no182_h14.g1)
ACCAG375346AG375347
length732766
length of high quality
(start - end)
292 (73 - 364)234 (44 - 277)
definitionCHROMAT_FILE: MSMg01no182_h14.b1 PHD_FILE: MSMg01no182_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:13 2005CHROMAT_FILE: MSMg01no182_h14.g1 PHD_FILE: MSMg01no182_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAAAAGAGGAATCTAAAGTGGCTAAGA
AACACTTAAAGAAATTTTTAACATCCTTAGTCATCTTGAAACTACAAATC
AAAACTATTTTGATATTTCATCTTAAAATCTTCAGAATAACTAAGGTATA
ACAAGTAACAGCTAACTCATGCTGGTAAGGATATGGATGGAGTAAGTGGA
ATAATTCCCCCATTGTTGGTAAGACTGAAAATTTGTACAGATACTGTCTT
AGTCAGGGTTTCTATTCCTGCTCAAACATGACGACCAAGAAGCAAGTTGG
GGAGGAAAGGTTTCATCCCGCTTACACTTCCCTATTGTTGTCCGTCATTA
GAGGAAGTGTTTCCCCCCCCCCCAAGCATATGTTTATTCAGGAGCTGATG
CCTAGTTCACGTATTCATGTTTTTTCCTGCCCTCCTTTCCCTGTCCTGCT
CCCTCGCCCTCCTACTTTTTCCTTACTACTTTTCCTGTTACCCCCTCTCC
GTTTTTTTTCTCTCCCCTTCGCCCTCCTTTTTTTCCCCCGCCTTTCCTTC
TTCTTTCCTGTCTCTTTTCTCCCCTTTCTTTTTTTTCTATACCCCTCCCC
TTATCCCCCGCTTTCCCTCCCCCCCTATTTTTTTTTCCTTTTTTCCCCTT
CTATTTTTTTTCCCCTTTCCTTCACTCTTTTC
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCAATATATGAAGAAAACAAACTTGTCAGTTTATTATAAAGGCAAT
AAACCGTTCTCTATCCACGTTTCTTCTCTTTAGGGTTTGTCCGAGGTAGA
GTTCGGGGCTTTTCTCCAGTGAACAGGCACGTTCACTAGTGCAGTTTCCC
CAAGGAGGGAGTTTAGTGTTTGGGGACGTTCTGTTTTTCTTTTCTTTTCC
TTTTTTTTTTGTCTTACTGATTGATTGATTTATACTTTTACGCTCCAGAT
TTTTATCACAACTCTTATGTTCCACACTCCGACTGTTACACATTCGATAG
AATTTTTTTTTTTTCCCCCCCCCCCCCCCCATGATAATTTGTTTTTTTAA
GCTCTTTTGTTTTNCCCCCCCCTGTTTTACAAAAATGTACGGCTCGTGAT
GGTGCGGGGGGGTATCACTATTATATCGCATATTTATTCTTCCCCCATCC
AAGCCTTTTTTTTTCTTCACGAATAAAATCTCTATAATATGTTGTATTAC
CTACTATGTTTTCCTTCTTTTTTTCTCTCGTTATATTAAATGATTCCCAC
TGTTTTTTTCTCGCCCCTGTTTCGCGCATGTATTTTCTTCCCTCCCCTTT
TTTTTTTTATCTCTTCCCTATTTTGTTGTCCCGTTTTTTCCTATTATTTT
TTGACTCCAGTGGGGTGTGTGGCAACTAAACGATCGCTTAGATTAAATTT
TAGCTTATAATAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h14.g1 MSMg01no182_h14.g1 CHROMAT_FILE:
MSMg01no182_h14.g1 PHD_FILE: MSMg01no182_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:14 2005
         (234 letters)



>mm_chr3_151683335_151683967
          Length = 633

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%), Gaps = 1/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaatatatgaagaaaacaaacttgtcagtttattataaaggcaataaaccgt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 433 gaattcaccaatatatgaagaaaacaaacttgtcagtttattataaaggcaataaaccct 374

                                                                       
Query: 65  tctctatccacgtttcttctctttagggtttgtccgaggtagagttcggggcttttctcc 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctctatccatgtttcttctctttagggtttgtccgaggtagagttcggggcttttctcc 314

                                                                       
Query: 125 agtgaacaggcacgttcactagtgcagtttccccaaggagggagtttagtgtttggggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtgaacaggcacgttcactagtgcagtttccccaaggagggagtttagtgtttggggac 254

                                                             
Query: 185 gttctgtttttcttttcttttccttttttttttgtcttactgattgattg 234
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 253 gttctgtttttcttttcttttcc-tttttttttgtcttattgattgattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)