BAC Information

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BAC

Clone NameMSMg01-182N14
Chromosome3 (Build37)
Map Location 92,861,928 - 92,862,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
Downstream geneEG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182N14.T7 (MSMg01no182_n14.b1)MSMg01-182N14.TJ (MSMg01no182_n14.g1)
ACCAG375616AG375617
length603702
length of high quality
(start - end)
178 (136 - 313)309 (47 - 355)
definitionCHROMAT_FILE: MSMg01no182_n14.b1 PHD_FILE: MSMg01no182_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:43 2005CHROMAT_FILE: MSMg01no182_n14.g1 PHD_FILE: MSMg01no182_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGATTTAAAGTAGA
AATGACGGATTGTTTCTTCTATAAAAGTTTACACTTGTGGTTCTTTTAAC
CTTTTCTATAAAATTACTTTTTAAGATAAATAAGAAAAGAATTGATCCTT
TCTTTGTAACCACAAATTGCTGCCTGCCAGTAAAAAATAAATAAATAAAG
TGGCTGAGAAAACTGCCTTGCTTGCTTACATTTTGTTAATTATAAAAAGT
CGCTTAGTTTTTAATGCATGTGGGTTCTTGGTAACAATTTGCTGGCCCCC
CTCTCTTCTCCTTCTCCTTTTTTTTTTTTTTTCCCCCTCCCCCCCTCCTC
ATTTTCTTTTTTTTACCTTCCCCCGTTTGTTTTCCCCCCCCCCCCCCCAA
TAAAAAAAAACCCCCTTTTCTCTTTTTGGTCCGCTTTCTCCCCCTTCTTT
TTTCTTACTCCTCCCTTTTTCCCTTTTTTTCCACCCGCGCATTTTTTTTT
CCGTTTTTCCCTCCCTCCTTTTTTTATTCCCCCCACTCCTTCTCCCTCTC
TTT
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAATTAAATCATACAATCAGTTGTGCTAAGGGATGGACTAAG
GTCTGTGGGCCTGCTATATTGTTGGCATATTTTGAGCAATGTATAATATA
TGAGACTAATTACATAAAATAATTACCAATGATCGAACAGTGAATTGCAA
CTGAACTTGAATACCAAATAGTCAGATATCTGGAGGGAAATACCTAGCAG
ACTATTCCTTGACTGAGTAGGGGCCCAATAAATATCTGGAGAGTCTCAGG
ATGGCAAATTACCCAGACTTGAAATTAAGTTAAAGTCTATACTTCTATGA
CCTTATCTTTTTGTTTACCCCCCCACCATGGGTCACCTTCAGTAACATTT
TGGATGAGTCACTCCACGTCAGATCTTTTTTTTTTTTTTTCCAATTTTTT
ATTAGGTATTTATTTCATTTACATTTCGAATGCTAACCCGAAAGTCCTCT
ATACCTTCCCCCCACTGCTCCCCTACCCACCCACTCCCACTGCTTGGCCC
TGCCGTTCCCCTGTACTGGGCATATAAAGTTTGCAAGACCAAGGTGTCTC
TCTTCCCAATGATTGTTTTGACTCACCCATCTTCTGATACTTATTGCATC
TAAAGACACCAGCTCCGAGAGGTACAGGTTACCTTCTATTTGTTGTTTCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_n14.g1 MSMg01no182_n14.g1 CHROMAT_FILE:
MSMg01no182_n14.g1 PHD_FILE: MSMg01no182_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:43 2005
         (309 letters)



>mm_chr3_92861724_92862432
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaattaaatcatacaatcagttgtgctaagggatggactaaggtctgtgggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcctaaattaaatcatacaatcagttgtgctaagggatggactaaggtctgtgggc 450

                                                                       
Query: 65  ctgctatattgttggcatattttgagcaatgtataatatatgagactaattacataaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgctatattgttggcatattttgagcaatgtataatatatgagactaattacataaaat 390

                                                                       
Query: 125 aattaccaatgatcgaacagtgaattgcaactgaacttgaataccaaatagtcagatatc 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 aattaccaatgatcgaacagtgaattgcaaatgaacttgaataccaaatagtcagatatc 330

                                                                       
Query: 185 tggagggaaatacctagcagactattccttgactgagtaggggcccaataaatatctgga 244
           ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 329 tggagggaaatgcctagcagactattccttgattgagtaggggcccagtaaatatctgga 270

                                                                       
Query: 245 gagtctcaggatggcaaattacccagacttgaaattaagttaaagtctatacttctatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagtctcaggatggcaaattacccagacttgaaattaagttaaagtctatacttctatga 210

                
Query: 305 cctta 309
           |||||
Sbjct: 209 cctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)