BAC Information

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BAC

Clone NameMSMg01-182O01
Chromosome3 (Build37)
Map Location 83,664,192 - 83,664,711
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182O01.T7 (MSMg01no182_o01.b1)MSMg01-182O01.TJ (MSMg01no182_o01.g1)
ACCAG375636AG375637
length718715
length of high quality
(start - end)
347 (72 - 418)532 (79 - 610)
definitionCHROMAT_FILE: MSMg01no182_o01.b1 PHD_FILE: MSMg01no182_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:45 2005CHROMAT_FILE: MSMg01no182_o01.g1 PHD_FILE: MSMg01no182_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGTCACTGCCGTAGGATACAGATTTCAGGATTAGAATGAATG
GAGGCATTCCCATTTCCATTCCTTTGTCTCTCGGATGCTGGGATCTGAGC
TAGGAGACAAAACACTATAGATATTACTTGCTAACTTACAGCAGCATCAT
GATTCTAAGGACATTGCTTCAGCCATGCCGGGTGTTCTCACCCAGCTGGT
CCTCCAACTACATCTCAAAAGACCATTCCACCACTCTCTCTGGCCAGCTG
CTTCGGGGTATCAGGGAAACTCTGAGGACCAGTGGACTGTGTGAGCAGGA
ACCTCCGGCCACTCTTCACTGGCTATGAAATGAGTCTGTTGATCAGAAGA
AATACTGAACGGAACACCGCCTTACAAGAGCTCAGAGACGGTGATTTTGG
CAGAAACAGGGAAGCTGAGTCCAAAGTAAGTGTTGCCCCTTCCACAGCTG
TCACAGTCCTATGTCATCAATGTGCTGACAGTCACCGGCTGGCTCCCCTG
AGAAGTGTTGAAATATTAAAGACTGAGCACCGGTCTTCACCGCTGCCAGG
CTAGAAAGTCAGCTCTGTCGCATCCCCATTCCCTTTGGTGTACGGCCATC
TAATGTCGTCAACCCTACATATGACTTCTCGCCCTGATGGCGGGTTCTCT
TGGCGCTAAAACCCACCC
NCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGCTTGCTGGACATGACC
TTATAAGGAGAGAAGAAGTCTAACCTAAAACCTGGCCACCAAGCTATGTG
ACTGCCTCAAGGGTAGCAGAGGTGGGGGTCTTAAGGCTATGTGTGCCCAG
AGCAGGGAGGAAGCCATCTGCTCATGCCATTCTCAGAATGAGATTTTCCG
AGTTTGAACACATCTTTACCTCACGTTTGCTCCAGACTGGTTTCCCTAGA
CGCATGGCTTTCTGGGCTCACAGGACCCTGAATTGTGGACAGGAATGATT
TCCATTTTCCAGATATGAAAACTGAGTCTTGTGATCTATTTAGTCACATA
GCCATCAAGATGTAAGCTCAAGTCTGCTAACAGTGCTTACCCCTATGGGT
CATAAACATTGCCCCAACAGTGCTGTGGAGGCTGGATTATTGGGGGTGAA
GGCATTGCTCTGGGACCCAGTAGTCAGCTGACACAGATCTGGATTGGAGG
CACATGGGCCACTCCTGAAGGCTGCCAAGAGTCAGTCCAGGAGAAGATTT
AGAGCAGTGATTAGCTGTAAGTCCATTAAAGCCAAAGTAAAGGGTATGTG
TTTTGGATGTGCAGTGAACAGTTACAGCCTGCAGGCTTACAATGATGATG
ATAGCCTCTTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_o01.g1 MSMg01no182_o01.g1 CHROMAT_FILE:
MSMg01no182_o01.g1 PHD_FILE: MSMg01no182_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:45 2005
         (532 letters)



>mm_chr3_83663887_83664818
          Length = 932

 Score =  948 bits (490), Expect = 0.0
 Identities = 516/532 (96%), Gaps = 12/532 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgcttgctggacatgaccttataaggagagaagaagtctaacctaaaacctggcca 60
           |||||||||||||||||||||||||||||||||||||||||            |||||||
Sbjct: 825 caggtgcttgctggacatgaccttataaggagagaagaagt------------ctggcca 778

                                                                       
Query: 61  ccaagctatgtgactgcctcaagggtagcagaggtgggggtcttaaggctatgtgtgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 777 ccaagctatgtgactgcctcaagggtagcagaggtgggggtcttaaggctacgtgtgccc 718

                                                                       
Query: 121 agagcagggaggaagccatctgctcatgccattctcagaatgagattttccgagtttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agagcagggaggaagccatctgctcatgccattctcagaatgagattttccgagtttgaa 658

                                                                       
Query: 181 cacatctttacctcacgtttgctccagactggtttccctagacgcatggctttctgggct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cacatctttacctcacgcttgctccagactggtttccctagacgcatggctttctgggct 598

                                                                       
Query: 241 cacaggaccctgaattgtggacaggaatgatttccattttccagatatgaaaactgagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cacaggaccctgaattgtggacaggaatgatttccattttccagatatgaaaactgagtc 538

                                                                       
Query: 301 ttgtgatctatttagtcacatagccatcaagatgtaagctcaagtctgctaacagtgctt 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 537 ttgtgatctatttagtcacacagccatcaagatgtaagctcaagtctgctgacagtgctt 478

                                                                       
Query: 361 acccctatgggtcataaacattgccccaacagtgctgtggaggctggattattgggggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acccctatgggtcataaacattgccccaacagtgctgtggaggctggattattgggggtg 418

                                                                       
Query: 421 aaggcattgctctgggacccagtagtcagctgacacagatctggattggaggcacatggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaggcattgctctgggacccagtagtcagctgacacagatctggattggaggcacatggg 358

                                                               
Query: 481 ccactcctgaaggctgccaagagtcagtccaggagaagatttagagcagtga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccactcctgaaggctgccaagagtcagtccaggagaagatttagagcagtga 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)