BAC Information

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BAC

Clone NameMSMg01-183G03
Chromosome3 (Build37)
Map Location 84,105,867 - 84,226,539
singlet/doubletdoublet
Overlap genenone
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G03.T7 (MSMg01no183_g03.b1)MSMg01-183G03.TJ (MSMg01no183_g03.g1)
ACCAG375993AG375994
length776727
length of high quality
(start - end)
193 (66 - 258)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no183_g03.b1 PHD_FILE: MSMg01no183_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:23 2005CHROMAT_FILE: MSMg01no183_g03.g1 PHD_FILE: MSMg01no183_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,105,867 - 84,106,056)(84,226,250 - 84,226,539)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCA
NGNAATATACAGAGGTGGTCAGTTTGTGAAGATCAACCTCTTTTGATTCA
CAGCCAGAAAAGCCTCTAGGAAACTAGAGATTGTTTCTTCATTTCAGTAA
TCCAGAGCTCTCAGGTCAAAAAACTATGGNCCTCCACAGAGAAAGAGGCC
GGCATTTGCCAGAGCAGGCTTTATTTCTCCTTTCATANAAATAAAGAAAG
GAAGGNAAACAGTAGGCAAGGAAGCAAGCAAGCAGNCATAAACTTCAAGA
ATGCAACATACAGGTCCTGGGACAAGTGTTACCCCCACCCACCCCCCANN
CATGTNCCCCCTTCCCCCTCCCGCNCCCCTGGGGNANACAACCCCTCTCC
CCTTTCCTTTCCCTTTTTTGCCCCCCCCCCCACCCTATACTCCCAATTCC
CTTTATTTCCTCCCCCCCCCCCTCCACTGTCACTTTCTCACCCTCCCCCA
AAATCACTTNCCCCCCCCTCCCCCCTCTTCACCCCCCCACACTTTTCTCC
ATAGTAGAGGGGGGGGGGCCCGTTCCCTCGCTNNNNNNCCACCAGCTCCC
ACAGACCCCCCCTTTTCCTTCCCCCTTTTCCCCCCCTCTTTTCTTTCCTC
GGGGGGGTGGGGAGCGGGCTCAANCTTTCTNCCTTTNCCTTTTCCCTTTC
TCATTCCACCCTTTTCCCCCCCTTTTTTTTTTTTCCCCTCCCCCCTTCAC
CCCTCTTTTACGGGGGTGGGGTTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACATCTGCAGTGTGAGCCAGATTTCTCTGTCA
CACCTCAGACCAACATGAAGCAGGAACACGTGGGAAGTGAATTCACACAT
ATCTGAGCTGTCAGGCCAGCCCCCTTACAATCCCTCCGTGCATTGGCAAC
CTGACTTTCAGTTCCTGACTGTACATAGCTAAGTCAGTAGACCACCAGGA
AGGGGCTGGCCAGCATGGGAAATAGCAGCTGTGCTCCTGAAATACATACA
CAGTTCCCTGTAGGGTAGGAAATGTCGATTCCTAATTCCTACTTCAGGAT
AAATTTGTTATACCAGCCGCCGCCCGTGGGGTAGAGGCCGACTGTGAATC
ATGGGTGCACCTGCACCCCGGACATCCTCCCGAAAGTCCTGTAACTGGTT
ATCAGCAACTCCCGCTCTGGGGGACAAGGATGACCGTATCGGGTGCTCTT
TTAAGTTGACTGTCTAAGGCAGTGGTTCTCAGCCTTCCTAATCTGTGACC
CTTTAAGGCTGTTCCTCGTGTTGTATGACCACTCCCACTTATCCCCATTC
ATTGAAGTTATTTTTATCGCTACTTCACGATTGTAAATTTGCCGTTTTAT
TGATCTTTTTCATTATATTATTGAAACAGGATAATTTTATTGATCTTTGG
CCTCTCCTACAATTAATATTTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g03.b1 MSMg01no183_g03.b1 CHROMAT_FILE:
MSMg01no183_g03.b1 PHD_FILE: MSMg01no183_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:23 2005
         (193 letters)



>mm_chr3_84105667_84106259
          Length = 593

 Score =  348 bits (180), Expect = e-100
 Identities = 187/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcagtttgtgaagatcaacctcttttgattcacagccagaaaagcctctaggaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcagtttgtgaagatcaacctcttttgattcacagccagaaaagcctctaggaaact 260

                                                                       
Query: 61  agagattgtttcttcatttcagtaatccagagctctcaggtcaaaaaactatggncctcc 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 261 agagattgtttcttcatttcagtaatccagagctctcaggtcagaaaactatgggcctcc 320

                                                                       
Query: 121 acagagaaagaggccggcatttgccagagcaggctttatttctcctttcatanaaataaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 acagagaaagaggccggcatttgccagagcaggctttatttctcctttcatagaaataaa 380

                     
Query: 181 gaaaggaagg 190
           ||||||||||
Sbjct: 381 gaaaggaagg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no183_g03.g1 MSMg01no183_g03.g1 CHROMAT_FILE:
MSMg01no183_g03.g1 PHD_FILE: MSMg01no183_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:23 2005
         (290 letters)



>mm_chr3_84226050_84226739
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatctgcagtgtgagccagatttctctgtcacacctcagaccaacatgaagcaggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacatctgcagtgtgagccagatttctctgtcacacctcagaccaacatgaagcaggaac 431

                                                                       
Query: 61  acgtgggaagtgaattcacacatatctgagctgtcaggccagcccccttacaatccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acgtgggaagtgaattcacacatatctgagctgtcaggccagcccccttacaatccctcc 371

                                                                       
Query: 121 gtgcattggcaacctgactttcagttcctgactgtacatagctaagtcagtagaccacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgcattggcaacctgactttcagttcctgactgtacatagctaagtcagtagaccacca 311

                                                                       
Query: 181 ggaaggggctggccagcatgggaaatagcagctgtgctcctgaaatacatacacagttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaaggggctggccagcatgggaaatagcagctgtgctcctgaaatacatacacagttcc 251

                                                             
Query: 241 ctgtagggtaggaaatgtcgattcctaattcctacttcaggataaatttg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgtagggtaggaaatgtcgattcctaattcctacttcaggataaatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)