BAC Information

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BAC

Clone NameMSMg01-183N07
Chromosome3 (Build37)
Map Location 127,948,945 - 127,949,258
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831, Pitx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N07.T7 (MSMg01no183_n07.b1)MSMg01-183N07.TJ (MSMg01no183_n07.g1)
ACCAG376301AG376302
length730793
length of high quality
(start - end)
318 (46 - 363)236 (75 - 310)
definitionCHROMAT_FILE: MSMg01no183_n07.b1 PHD_FILE: MSMg01no183_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:57 2005CHROMAT_FILE: MSMg01no183_n07.g1 PHD_FILE: MSMg01no183_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATCCTTTAGAGCAGAACATCTGATAAATCCCCGCCTCGCCTTG
CTTTGGCTTGCTGATAATTTCATTTCTCGGAGAGCTGAGGAGGCGAGAAT
GGTGAAATGGTATTTTGAACCTAATTTTACTAAATCCATCTAAGTCAAAG
GTGATGTTCAAACTATTTAATAAGAAGTAGTGAGTGGGTACCCACAGTCT
CTGTGGCTTTCTGTGGCCCAACAGTTAGTCCTTGAGCTACTGGAATGGAG
GAGGGTGGGGCATGTGAAAAGGAAATGGCCTGAGTATCCAGTGAATTGGG
CAGGGGCACCATAGTGTTTCTCGACACCCCCGCACTAATCCAGCGGCACC
CCCAGTAGCTGAACAGCAGTACAACAGCTTTGTATGTATCCACTGCTTAA
ATTGTAAACTGTCAAGTCCCCATCACTTAATGCATATCGATCACCTACAA
ACTGTTAAGTCGTCCAACCCTCCCCACTTACTACTTCAGCCTCCTGCATT
CGTCCCAGTAACCCGTGGACAGTTTCTTTAACCATAGATCTTATGATTTT
CAGCCCCCTAAAATGCATCCTGACTCTTCTTGTCTTCAAGGCACTATTAT
GAATCCANTTAATACTCTCATTACAGAGTGAACTTGAATGAATTTGGTAC
AAAATCAAAATCTCCCGTATATTTCTGATG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGCCATCTATCTCAATAAAAGGTG
GGTAGAGTCTGAGGAATGATTCCCAGGGCTGATCTCTTACATCCACATGC
ACACACATGTATACACACACACACACACACATACACACATACACACACAC
ACACACATACACACACACACACACACACACACACATACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGANNTCTGTACTTTTTTATATAACACAACACCCGTTAACAACG
AAGAAGTTTTTTTTTTTTCCCCCCCCCCCCCCCCGAGATTGATTTATAGA
AAAATTTTTTCGGCTGGCCCACAAAAAAAAAAAAAAAAACTGCTTTGGGG
GCGGTGCTTGTCCTCCCCCGACAATTCGCCCCAAACCGCGCCACACCCAC
AAAAACTCCTAATATCCAACAAATTGTAAAGCACACACTCCACCCCATGC
CCCCCATTTATCCCCCCTGCCGACCCGCGCACACACAATATCTTTTCCCC
CGCCGATTCACTGAATAAAATAACCTATCCCTAACACCGACATAAATATC
TAATTACCTCGCCCCCCCTAATCTCATCCCCCCTTAACCAATATTCACCC
TTCCTCTCACTTATTAACTTTCCCCCCCCCTATTCCACCCACCCCATTTT
TTTCTTGCACCCACTATTCCAGTTTCTGCGCCTGCCACCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n07.b1 MSMg01no183_n07.b1 CHROMAT_FILE:
MSMg01no183_n07.b1 PHD_FILE: MSMg01no183_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:57 2005
         (318 letters)



>mm_chr3_127948607_127949325
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcatcctttagagcagaacatctgataaatccccgcctcgccttgctttggct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggaattctcatcctttagagcagaacatctgataaatccccgcctcgccttgctttggct 593

                                                                       
Query: 64  tgctgataatttcatttctcggagagctgaggaggcgagaatggtgaaatggtattttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgctgataatttcatttctcggagagctgaggaggcgagaatggtgaaatggtattttga 533

                                                                       
Query: 124 acctaattttactaaatccatctaagtcaaaggtgatgttcaaactatttaataagaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acctaattttactaaatccatctaagtcaaaggtgatgttcaaactatttaataagaagt 473

                                                                       
Query: 184 agtgagtgggtacccacagtctctgtggctttctgtggcccaacagttagtccttgagct 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actgagtgggtacccacagtctctgtggctttctgtggcccaacagttagtccttgagct 413

                                                                       
Query: 244 actggaatggaggaggg-tggggcatgtgaaaaggaaatggcctgagtatccagtgaatt 302
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actggaatggaggaggggtggggcatgtgaaaaggaaatggcctgagtatccagtgaatt 353

                         
Query: 303 gggcaggggcacca 316
           ||||||||||||||
Sbjct: 352 gggcaggggcacca 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)