Query= MSMg01no184_a09.b1 MSMg01no184_a09.b1 CHROMAT_FILE:
MSMg01no184_a09.b1 PHD_FILE: MSMg01no184_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:12 2005
(364 letters)
>mm_chr3_29078469_29079233
Length = 765
Score = 596 bits (308), Expect = e-175
Identities = 343/360 (95%), Gaps = 10/360 (2%)
Strand = Plus / Minus
Query: 15 gaattcaatctcc---------atat-aaaaaaagtagattttatacaattactttggtc 64
||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct: 587 gaattcaatctccagtactacaatataaaaaaaagtagattttatacaattacttaggtc 528
Query: 65 tatgcttggtgaaggactatcagcttaaacggaacatatacccttaatatgtaagaacta 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 527 tatgcttggtgaaggactatcagcttaaatggaacatatacccttaatatgtaagaacta 468
Query: 125 tgagagtataaattgtatcatccttcatttcttaaatgtctgctgaatgcctattatgcg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 467 tgagagtataaattgtatcatccttcatttcttaaatgtctgctgaatgcctattatgtg 408
Query: 185 ctgtcctgaacaaaactgacaacaattaccatctttaagaaatttccattctattaacgt 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 407 ctgtcctgaacaaaactgacaacaatttccatctttaagaaatttccattctattaacgt 348
Query: 245 gaacagtcaataaataaggaccacagtacaaaagacatcgttaagctttgggggatggag 304
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 347 gaacagtcagtaaataaggaccacagtacaaaagacattgttaagctttgggggatggag 288
Query: 305 ataaagtattacagctccaagaagtgcagcagtggtaggggtggataagtgaaggtccag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 287 ataaagtattacagctccaagaagtgcagcagtggtaggggtggataagtgaagggccag 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space: 268380
Effective search space used: 268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_a09.g1 MSMg01no184_a09.g1 CHROMAT_FILE:
MSMg01no184_a09.g1 PHD_FILE: MSMg01no184_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:12 2005
(631 letters)
>mm_chr3_28931368_28932398
Length = 1031
Score = 1197 bits (619), Expect = 0.0
Identities = 628/631 (99%)
Strand = Plus / Plus
Query: 1 catgtgtggctgaggttggctttgaactcctgatcccctcgttgctgcctcacgggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgtggctgaggttggctttgaactcctgatcccctcgttgctgcctcacgggtgct 260
Query: 61 agaattacagtagtgaagagccattcactttgctgtaagcccagaaatcttgaggatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattacagtagtgaagagccattcactttgctgtaagcccagaaatcttgaggatgct 320
Query: 121 ttaggagaataagagaaaatgtttaaagactttccagaaagaataccagcagcccagaaa 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggagaataagagaaaatgtttaaggactttccagaaagaataccagcagcccagaaa 380
Query: 181 attaaagcaagattgtcactcgaggaaatggggacatggctgagctcagctacacacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaagcaagattgtcactcgaggaaatggggacatggctgagctcagctacacacctg 440
Query: 241 tgagtaagtccctgagtatggttcctggggatacacagagtcacacactctggcaatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgagtaagtccctgagtatggttcctggggatacacagagtcacacactctggtaatcca 500
Query: 301 agtgttcctatgctgtcgtgaaagatggggacaggaatatctcagcagttcgcaagccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgttcctatgctgtcgtgaaagatggggacaggaatatctcagcagttcgcaagccag 560
Query: 361 ctagcctgaccaacacagaggccagcaacgggagacctcccctcaagcaaagacagtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagcctgaccaacacagaggccagcaacgggagacctcccctcaagcaaagacagtcag 620
Query: 421 gtaccgacacggaggcagccctctgacttccacagacattctgcggcacattcatacctg 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 gtaccgacacggaggcagccctctgacttccacagacattctgctgcacattcatacctg 680
Query: 481 agaccattgcaggggatagaagtcaaaactacactgaaatcccccctcatctcagtcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaccattgcaggggatagaagtcaaaactacactgaaatcccccctcatctcagtcaag 740
Query: 541 agagcagagagagctagtgaggatacacagcgaaaggtctgttcaggcactgtggggaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagcagagagagctagtgaggatacacagcgaaaggtctgttcaggcactgtggggaga 800
Query: 601 gtggaaagagtccagctgctacatccatcag 631
|||||||||||||||||||||||||||||||
Sbjct: 801 gtggaaagagtccagctgctacatccatcag 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
