BAC Information

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BAC

Clone NameMSMg01-184G15
Chromosome3 (Build37)
Map Location 43,098,277 - 43,098,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184G15.T7 (MSMg01no184_g15.b1)MSMg01-184G15.TJ (MSMg01no184_g15.g1)
ACCAG376705AG376706
length1,208692
length of high quality
(start - end)
348 (106 - 453)380 (313 - 692)
definitionCHROMAT_FILE: MSMg01no184_g15.b1 PHD_FILE: MSMg01no184_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:46 2005CHROMAT_FILE: MSMg01no184_g15.g1 PHD_FILE: MSMg01no184_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCAGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTTGTGTAAGAATGTGTTTGTAGGTTAATGTGAACAATTAAAAAT
GTTTAAAAATCCTAAATTTAAATATTTGATACAGTTTTGCAAAGCAAACT
CACATGTGGAACTTCAATGCTGACAAACGTCAAAATCGATGAAACTCCTG
GAACTTTGGTTTTGAGAAAATACAGTACACCCATCCTGAGAGCTTCATGA
TTATCTCAGACTTCAAAAAACCAGGATGTTCAGAGAACTTGCTTAAGGTC
AATTCAGAGATTAAGCATACAATATGGCTATATATATTAAACACTTGATT
TTTGGTATTCATAGAAACTCTGTTTTGATTTCGTTAAAGTATCATTGGAA
TACCTAAAAAAAAAAAACAAAACAAAAAAAACAAAAACAAAAACAAAAAC
AATTTTTCTCCCCCCCCCCTTATAATAATAAGGCAAAATGAAATAATTTC
CCACAATGTTCCTGGAAATAATAATAATTAATAATTAATAATAATAATAA
TTCTTGGTCTTGGACTTGGTCTTGTTGTTGTTCTTCTTCTTCTTCTTCTC
CTTCTTCTTCTGCTTCTCTTCCTTCTCCTTCTCTTGAACCTCTTCTTCCT
CATCATCCTTTCAATGACTTTATCCTGATGCAAGGAAGCTGAATCCCCAT
CCTTTCTTTCATGTTGTAGAAACACTTATTTTAATGTGTCTCTAGCTGCA
TATGCATCAAAAGATGGCCTAGCCTGCCATCAGTGGAAAAAGAGGCCCAT
TGATTATGCAAACTTTATATGCCTCACTACAGGTAAAAACCAGTACCAAA
AATTGGAAGTGATTGATTAAAATAATTTACATTTCTATTTGATTTAGATT
TTACCATATCTATTTTAATAAGTTTCATTTTCTGTCGGCTAATGGTTTTT
GTCTATTCTTTAACCCCCTACTTTGTTAGTCTATATTATAACGATTTTTC
TCATTTAATGTTCATCTCTGTTCTATAAAGTTGTTTACCCTCAATATACC
TATCTCTTCACAATATAATACTCTTTTCTCTTTTTATAAATTACTATATT
ATTACTACTTTCTTCTTCTCTTCTTTTTTTCCTTCCTTTTGTTATTGTAT
GTTCCTTTTCTTTCTTTTTATCTTCTTATATCTATTTATACTTCTTTTAA
TATATTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCAAATGGCA
GAGAAGTACCTGAAAAAACGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGTTGGCGAAGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGAAGGCTTGTACAAGCACTCTGGAA
ATCAGTCTGGAGAATCCTCAGAAAATTGGACATAGTACTACCGGAAGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACATGAACCACTATGTTCATAGCAGCCTTATTAATAATATCCAT
AAGGTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAATTTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACAATCACAAAAAAACTTAAATAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAATATAGTGAGATATAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_g15.b1 MSMg01no184_g15.b1 CHROMAT_FILE:
MSMg01no184_g15.b1 PHD_FILE: MSMg01no184_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:46 2005
         (348 letters)



>mm_chr3_43098077_43098824
          Length = 748

 Score =  617 bits (319), Expect = 0.0
 Identities = 341/349 (97%), Gaps = 3/349 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatcctaaatttaaatatttgatacagttttgcaaagcaaactcacatgtggaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatcctaaatttaaatatttgatacagttttgcaaagcaaactcacatgtggaacttc 260

                                                                       
Query: 61  aatgctgacaaacgtcaaaatcgatgaaactcctggaactttggttttgagaaaatacag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aatgctgacaaacgtcaaaatcgttgaaactcctggaactttggttttgagaaaatagag 320

                                                                       
Query: 121 tacacccatcctgagagcttcatgattatctcagacttcaaaaaaccaggatgttcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacccatcctgagagcttcatgattatctcagacttcaaaaaaccaggatgttcagag 380

                                                                       
Query: 181 aacttgcttaaggtcaattcagagattaagcatacaatatggctatatatattaaacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttgcttaaggtcaattcagagattaagcatacaatatggctatatatattaaacact 440

                                                                       
Query: 241 tgatttttggtattcatagaaactctgttttgatttcgttaaagtatcattggaatacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatttttggtattcatagaaactctgttttgatttcgttaaagtatcattggaatacct 500

                                                            
Query: 301 aaaaaaaaaaaacaaaacaaaaaaaacaaa--aacaaaaacaaaaacaa 347
           |||||||||||| |||| |||||||| |||  |||||||| ||||||||
Sbjct: 501 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaacaaaaa-aaaaacaa 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)