BAC Information

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BAC

Clone NameMSMg01-184N13
Chromosome3 (Build37)
Map Location 114,943,879 - 114,944,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N13.T7 (MSMg01no184_n13.b1)MSMg01-184N13.TJ (MSMg01no184_n13.g1)
ACCAG377008AG377009
length708730
length of high quality
(start - end)
310 (62 - 371)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no184_n13.b1 PHD_FILE: MSMg01no184_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:23 2005CHROMAT_FILE: MSMg01no184_n13.g1 PHD_FILE: MSMg01no184_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTAACNNNAACTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTTGTTTAGCTCTGTACCCCATTTTTAAA
AGGCTGGTTTGGTTCTCTGGAACTCTAACTTTTTGAGTTCTTTTTATATA
TTGGTTATTAGCCCTCTATCAGATGTAGGGTTGGTAAGATCTTTTCCCAA
TCTGTTGATTGCTGTTTTGTACTATTGGCAGGGTCCTTTGCCTTACAGAA
GCTTTGTAATTTTATGAGGTCCCATTTGATCTTAGATAAGCTACTTATGT
TCTGTTCAGGAAATTTTCCCCTGTGCCTATGTGCTTGTAACTTAAACTTC
TTTAACCCAGAAAGGCAATTTATTGTCTTCACCCCCCCCCCGAAAAAGGT
TCACTTTCATAGAGTCTGACCAGGCTACACTAAAGAATCAATGAATCTTC
ACAGGACGTATACTGTTGCCAGCATTTAGGCCTGTTTTCATGTTTTAAAA
GGTTTTATTCTCAGATTTGACATGTAGGCATGAAAGATTCAGACTCATAA
CCTATTTCTAATCTGACCATTAGAACATTTTTTTCCTTCTTTATCAGAGC
TCCTCAAACTCTCATTGGGCCTGATTAGGTCACATAGTTAACCCAGAGCT
AATCTTTATACCCAGTATACGTGATAGTCTTTGTTCCCCTCACCCCCTGA
ACCCAGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATTGGAACTGTCTTGAATAACTT
CCTAAATTCCATTCCTTATCAACAGACTTAAAGCATTGATAAGGACAGCA
TTGTCTTTTACTACAGCAAGCCTCCTACTTGAAATTTCAACTGTCCCAAC
CCCGTCTCCGCCCCCACGTCCTTAACCTTTAAATTTAAAGTTCTTCTTTA
CTCAGCAATGGGATTTTCTTTAAGTGTATGTCAAATCACATCACTCATTT
TATAAATCCCAATTCTTCTTTTTTTCTCTCTCTCTCAATGCTCAAATGTA
CAGACCATTATTTCTCACTCTACCTCCGAACTTGCAGCTTTTTATTCCTG
GGACACTTTCTCTGACGCGTGAGACTATTTCACCATTTAGATCTCAAATC
GCTGGCTCCTTGGAGAGCCCTCTTTGACAACACTAATTAAAGTATCAGCA
GCTTTTAACATTTCCTCCTGACTGTATTTGTTTTCCTCTGAAGTTAGTTC
CTTTGTGTATAGATGGTGTTGTCTGCTTTATCTTTCTAGAATGTAAAACT
GATTAAGTCAGGGAATTTATCCTGCTCAGGTCTGTATGTAGCTAAGAATA
GAGCGTTGCCTCAATTAGATAATGTGGAATGAATACATGAATAAAAAAGC
AGCTTTTTGTATCTATCCATCACATTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n13.g1 MSMg01no184_n13.g1 CHROMAT_FILE:
MSMg01no184_n13.g1 PHD_FILE: MSMg01no184_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:23 2005
         (294 letters)



>mm_chr3_114943679_114944372
          Length = 694

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattggaactgtcttgaataacttcctaaattccattccttatcaacagacttaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttattggaactgtcttgaataacttcctaaattccattccttatcaacagacttaaagca 423

                                                                       
Query: 61  ttgataaggacagcattgtcttttactacagcaagcctcctacttgaaatttcaactgtc 120
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 422 ttgataaggtcagcattgtcttttactacagcgagcctcctacttgaaatttcaactgtc 363

                                                                       
Query: 121 ccaaccccgtctccgcccccacgtccttaacctttaaatttaaagttcttctttactcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccaaccccgtctccgcccccacgtccttaacctttaaatttaaagttcttctttactcag 303

                                                                       
Query: 181 caatgggattttctttaagtgtatgtcaaatcacatcactcattttataaatcccaatt- 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 302 caatgggattttctttaagtgtatgtcaaatcacatcactcattttataaatcccaattg 243

                                                      
Query: 240 cttctttttttctctctctctcaatgctcaaatgtacagacca 282
           ||| ||||||| | | |||||||||||||||||||||||||||
Sbjct: 242 ctt-tttttttttttttctctcaatgctcaaatgtacagacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)