Query= MSMg01no185_b17.b1 MSMg01no185_b17.b1 CHROMAT_FILE:
MSMg01no185_b17.b1 PHD_FILE: MSMg01no185_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:44 2005
(309 letters)
>mm_chr3_7938826_7939531
Length = 706
Score = 466 bits (241), Expect = e-136
Identities = 297/335 (88%), Gaps = 35/335 (10%)
Strand = Plus / Minus
Query: 5 gaattcttgccttaaacaaaagacaaataaaaggtcatttgaaagtactctacaaagcta 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaattcttgccttaaac-aaagacaaataaaaggtcatttgaaagtactctacaaagcta 310
Query: 65 tatagagaggaatgcatcacaac-tttttttttgattagttaaaatatattcttactatt 123
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatagagaggaatgtatcacaacttttttttttgattagttaaaatatattcttactatt 250
Query: 124 tttaggacgtccctggataataaaaaaacaaaacaaa----------------------- 160
||||||||||||||| |||||||||||||||||||
Sbjct: 249 tttaggacgtccctg---aataaaaaaacaaaacaaaacacacacacacacacacacaca 193
Query: 161 -----acacacacacaaaaaaaaaccagactgacatttactttctaaagtaaccagttta 215
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 192 cacacacacacacacacaaaaaaac-agactgacatttactttctaaagtaaccagttta 134
Query: 216 tcattataaaataacaacttagcttgaagaattattaagatagaagttgttatatttctt 275
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 133 tcattataaaataacaacttagcttgaagaattactaagatagaagttgttatatttctt 74
Query: 276 tctcttatctaattgctaaatatagaaaaa-ctag 309
|||||||||||||||||||||||||||||| ||||
Sbjct: 73 tctcttatctaattgctaaatatagaaaaaactag 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 706
Length adjustment: 9
Effective length of query: 300
Effective length of database: 697
Effective search space: 209100
Effective search space used: 209100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_b17.g1 MSMg01no185_b17.g1 CHROMAT_FILE:
MSMg01no185_b17.g1 PHD_FILE: MSMg01no185_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:44 2005
(357 letters)
>mm_chr3_7800094_7800850
Length = 757
Score = 644 bits (333), Expect = 0.0
Identities = 351/357 (98%)
Strand = Plus / Plus
Query: 1 ttcaagtaactagaatttctgtcaattgaattttcacgcctgagctcaatgtagaaagcc 60
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 201 ttcaagtaactagaatttctgtcaattgaattttcatggttgagctcaatgtagaaagcc 260
Query: 61 atttatactaaacaatattatatccacctaggtctcttggttacttattttagaaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatactaaacaatattatatccacctaggtctcttggttacttattttagaaagagt 320
Query: 121 aatagaggaaataagatttattgattatctgattcagatttgctgctattctgagaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagaggaaataagatttattgattatctgattcagatttgctgctattctgagaattt 380
Query: 181 tgtgtgtaagctctacttaattctcatggcatccacatcactttagcactctttcctctg 240
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgtgtgtaaactctacttaattctcatggcatccatatcactttagcactctttcctctg 440
Query: 241 gcaatgaaactctaaggcatccaaactttgctataagcagtcaagcgtgatccacacctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaatgaaactctaaggcatccaaactttgctataagcagtcaagcgtgatccacacctt 500
Query: 301 atgcaagcttgaatttgcagcctcttgtcagtctccctacgcatcctaagttcttca 357
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atgcaagcttgaatttgcagcctcttgtcagtctccctactcatcctaagttcttca 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
