Query= MSMg01no185_d15.b1 MSMg01no185_d15.b1 CHROMAT_FILE:
MSMg01no185_d15.b1 PHD_FILE: MSMg01no185_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:52 2005
(659 letters)
>mm_chr3_139080923_139081980
Length = 1058
Score = 1075 bits (556), Expect = 0.0
Identities = 568/572 (99%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 88 ggctggagagatggctcagtggttaagagcaactgaagctctgccaggggacgcaagttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 ggctggagagatggctcagtggttaagagcaactgaagctctgccaggggacgcaagttt 999
Query: 148 aagtcccgggatctgcacaatggctcataaccatctgtaactccagtttgaggggattcc 207
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 aagtcccgggatctgcacgatggctcataaccatctgtaactccagtttgaggggattcc 939
Query: 208 aaactgtcttttggccttcctaggcagtagacatgtatgtggtacacagatatataaaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aaactgtcttttggccttcctaggcagtagacatgtatgtggtacacagatatataaaag 879
Query: 268 caaatacccatacacataaagactaatgatgaatcacttaaacattctacattttaatga 327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 878 caaatacccatacacataaagactaatgatgaatcacttaaacattttacattttaatga 819
Query: 328 tttagggagacagaggagagagttttggttgagtgtgggctccaagtgtcagttgcttgc 387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 818 tttagggagacagaggagagagttttggttgagtgtgggcttcaagtgtcagttgcttgc 759
Query: 388 ttgctgtgtgacccttcaataaccactcaatttttgttatcctcggtctatttcaagaag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttgctgtgtgacccttcaataaccactcaatttttgttatcctcggtctatttcaagaag 699
Query: 448 tggaagctaattatttgtatcatgagattagtacaattgcaaaacaggtctgtaaggtaa 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 698 tggaagctaattatttgtatcatgagattagtacaattgcaaaacaggtctgtaaggt-a 640
Query: 508 aaaaaaaaaacatgaaaagaaaactggttcttgactatgaaagcatgtgaatgttattct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaaaaaaaaacatgaaaagaaaactggttcttgactatgaaagcatgtgaatgttattct 580
Query: 568 tctatagaaactaatttcaatgcaagttaaaacacaaagctaactaatcagggttcggac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctatagaaactaatttcaatgcaagttaaaacacaaagctaactaatcagggttcggac 520
Query: 628 tattagggaattttatcccgggtttttttttt 659
||||||||||||||||||||||||||||||||
Sbjct: 519 tattagggaattttatcccgggtttttttttt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_d15.g1 MSMg01no185_d15.g1 CHROMAT_FILE:
MSMg01no185_d15.g1 PHD_FILE: MSMg01no185_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:52 2005
(287 letters)
>mm_chr3_138984215_138984902
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 tccttgtactcaaaattttgatgacttgaatgaagaatatacgtttctagcatgctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttgtactcaaaattttgatgacttgaatgaagaatatacgtttctagcatgctagag 260
Query: 61 cccaatatgtttaggacctttatatgtccatggatggagctgatctagtaaaaattaaca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaatatgtttaggacctttatatgtccatggatggagctgatctagtaaaaattaaca 320
Query: 121 aaagaggtcaaacgaagccaaagaaggtgatggggacactccctgcataaactgaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaggtcaaacgaagccaaagaaggtgatggggacactccctgcataaactgaagaaa 380
Query: 181 agtgaaaaaaaaa-tcaaagctatatcttagctgacacattagttatgctccggaggcag 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgaaaaaaaaaatcaaagctatatcttagctgacacattagttatgctccggaggcag 440
Query: 240 gggcttgaagatgcattccatgcactatggaattctacacacattcta 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcttgaagatgcattccatgcactatggaattctacacacattcta 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
