BAC Information

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BAC

Clone NameMSMg01-185J23
Chromosome3 (Build37)
Map Location 39,784,215 - 39,784,528
singlet/doubletsinglet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J23.T7 (MSMg01no185_j23.b1)MSMg01-185J23.TJ (MSMg01no185_j23.g1)
ACCAG377558AG377559
length762765
length of high quality
(start - end)
319 (62 - 380)292 (91 - 382)
definitionCHROMAT_FILE: MSMg01no185_j23.b1 PHD_FILE: MSMg01no185_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:22 2005CHROMAT_FILE: MSMg01no185_j23.g1 PHD_FILE: MSMg01no185_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATAATNNNNNNGCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCCTTGGAGGCACAGGCCTATAATCCAGT
GCTAAGGCAGCACAGACAGGAGAACCATCTGACATTCACACCCAGCATGG
GCTATGTTGTGAGTTCCTGGCCAGCTAAGGTTTCAGAGGGAGGATTTGCC
TGGTCATCTTACCTGTTCTCATGCAGTGGATACTTTTATTTCATTCTAGA
TTCCCTAAAACAGATTCTGCCAACTCGGAAGCACCAGTGTGTGCTGTGTA
CCCTGAAACACCATGGAAGCAATGATGAGAACAGGCAAGAACTCCAAGCA
GTTTCCTTTAATTGAGATAGGGAATTTTATAATCTGGACGCTTGTCTGGT
TGCAGAAATATTCTTTTCTTATATTTAGTGAGGCCCCTATGGTGTGTAGC
ATGCATATTTTATGTATCAACATATTTATGAGTTGCAGACACAGGCGTAG
GTTTTGCTTGCTTCAGTCAAAGACACTTCACCTAAGTTTCCCTTAGCCCT
CTCTCAGCCTTTCAGCTCAGATTGAAAGTGAGGAGCTAAAGAGAACTCCA
AATTAAGGTCAACGTTATCACCAACGGAAGCCCAAGATCTATGGCGAGTG
ATGTGCCGTTTCCCCCACCATGCATTTCTTTATATTTTCAAGAAAATATA
AAATGAACATCTTTCTTGAATCCGAGAATGATGCTTGGACCCATTTACAC
CATTTGTAAGGA
NCACCCCCNCCCAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCGACCT
TCAAAGAAGACCCAATACCAATACTCTTCAAACTATCCCACCAAATAGAA
ACAGAAGGAACACTACCCAATTCATTCTATGAAGCCACAATTATGTTTAT
ACCTAAACCACACAACGTCTCAACAACAACAAAAAAGAGAACTTCAGCCC
AATTTCCCTTATGAATATTGATGCAAAAATACTCAATAAAATTGGAACAA
ACTGAATCCAAGAACCCAACAAAACAATTATCCTTCATGATAGAGTAGGC
TTTATCCTAGGAATGCAGAAATGGTTCAATATATGTAAATCCACCCACAT
AAGCCACTATATAAAAAAAACTCAAAGGAAAACAAACAAACACATGATCA
TCTCGTTAGATGTTGAGAAAGCATTTGACAAAATTCAACACTGCTTCATG
GTAAAAGTTTTGGAAAGATCAGGAATTCATGGACTATACCTAAACATATT
AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAACTAAATGGTGAGA
AACTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGACTGCCCACTC
TCTCCCTACCTATTCAACATAACACTCAAAAGCCCTGGACAGAGCAATTA
GACAACAAAAGGAGGTCAAGGGGATACAAATTAGAAAGGATGAAGTAAAA
ATATCACTATTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j23.b1 MSMg01no185_j23.b1 CHROMAT_FILE:
MSMg01no185_j23.b1 PHD_FILE: MSMg01no185_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:22 2005
         (319 letters)



>mm_chr3_39784011_39784729
          Length = 719

 Score =  565 bits (292), Expect = e-165
 Identities = 309/316 (97%), Gaps = 4/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttggaggcacaggcctataatccagtgctaaggcagcacagacaggagaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttggaggcacaggcctataatccagtgctaaggcagcacagacaggagaac 264

                                                                       
Query: 65  catctgacattcacacccagcatgggctatgttgtgagtt--cctggccagctaaggttt 122
           |||| |||||||||| ||||||||||||||||||||||||  |  |||||||||||||||
Sbjct: 265 catccgacattcacatccagcatgggctatgttgtgagttatc--ggccagctaaggttt 322

                                                                       
Query: 123 cagagggaggatttgcctggtcatcttacctgttctcatgcagtggatacttttatttca 182
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 cagagggaggatttgcctggtcatcttacccgttctcatgcagtggatacttttatttca 382

                                                                       
Query: 183 ttctagattccctaaaacagattctgccaactcggaagcaccagtgtgtgctgtgtaccc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctagattccctaaaacagattctgccaactcggaagcaccagtgtgtgctgtgtaccc 442

                                                                       
Query: 243 tgaaacaccatggaagcaatgatgagaacaggcaagaactccaagcagtttcctttaatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaaacaccatggaagcaatgatgagaacaggcaagaactccaagcagtttcctttaatt 502

                           
Query: 303 gagatagggaatttta 318
           ||||||||||||||||
Sbjct: 503 gagatagggaatttta 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)