BAC Information

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BAC

Clone NameMSMg01-185O14
Chromosome3 (Build37)
Map Location 89,508,554 - 89,508,841
singlet/doubletsinglet
Overlap genenone
Upstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185O14.T7 (MSMg01no185_o14.b1)MSMg01-185O14.TJ (MSMg01no185_o14.g1)
ACCAG377755AG377756
length703746
length of high quality
(start - end)		306 (46 - 351)291 (91 - 381)
definitionCHROMAT_FILE: MSMg01no185_o14.b1 PHD_FILE: MSMg01no185_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:44 2005CHROMAT_FILE: MSMg01no185_o14.g1 PHD_FILE: MSMg01no185_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGAGATCCACCTGTCTCTGCTTCCCAACTGCTGGATTAAAGGT
GTATGCTACCACAGCCAGCCTTGCTCCACTGTCTGTCTGTCTCTTTCATT
CTTTCTTCCATTTTTTTTTTAAGATCTATTGATGTATGTTATGTATATGG
GTGCTTTGACTGCAGATGTGTCTGTACATCAGAAGTGGGCATCAGATCAC
ATTGAAGATGGTTGTGAGCTGCCTCAGGCTGCTGGTAGTGAAAGTATAAC
AACGTAAAAACAGAATTCTAGGCCTTTAGGCCCAGGCTTGGGAATGTGGT
CTTTTTATTTTCCCCCCCCCCCCCCATAGNAACATTCCTCCATCCACCCG
CTTCCTGGCCCCCAACAATAAAAATTAAAAGAGGGGGGGGAGAACCTGCA
ATGCAAATGTGCTATTGTTGGGGGCTCTTACAAGCTGTCTTGAGAGTCAA
CAATTACCAGGCATTCCTTGTGACTCTTGTAACTTTACACTGCCTTGAGA
CTCTTAAAGGGTATCTTTGTTATCTTCTAATAACGCCTTCCCCACTGCCT
TAAGATTGGAAGTACCTCCTTTTAATTATTATTTATCTCTATATTTTAAT
TTTCATGTAACTACCCATCTCTTTATTTATTTTATCCTTTTTTTTTCTCC
CCT

TTTTCTTTNNNNCATCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGCGATG
AGTCGATGAAACATTTTAGAACTAGATAAACAGATGGGCTGCATTAGCAC
GTGGAAGTCTGTGAAAGAATCTCAAGAAAAAGTGCCTGCTGCTGTCCATG
CTACATACAGCAGAGCTGACCCTCGAAGACACCCTGGTATGGCAAAGAAG
CCATTATAAAAAATCTGGTATTGACACCAGGTGTGGCAGTCCATAACCCC
AACACTGAGGATACTGAGGCAGGAGGATGGCTAGTTTCAGACTAGCTTGT
GCACTTAGCAAGACTGATTCAAAAATCCTTTAAGTGAAACATACCATTCC
ACTAAAATGTAAAAGAGCTAGAATAGGCAAATCTATACAAATAGAAACCA
TATTAGTGGTGGCATAAGACTGGGCAGGGGGCTAGGGACATGGTTTAGTG
GTTAAGAGCATTAGTTGCTCTTCCAAAGGACCAGAGTTCAATTCCCAACA
TCCTCTTCTGGCCTCCCTGAGCACCAGGCAAACACATAGTGTACAGACAT
ACATATGGGTAAACACTCATATATACAAAATAAAACTTTTTAAAAAAGAC
AGCTATAGTTGGCTCTTTAAAAAGACTGAAAAAGGTTGGTTTGTGGGGGA
TGTTGAANCCTCTTCTTCTTCCAATTTACTCCATCACTCCTCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_o14.g1 MSMg01no185_o14.g1 CHROMAT_FILE:
MSMg01no185_o14.g1 PHD_FILE: MSMg01no185_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:44 2005
         (291 letters)



>mm_chr3_89508354_89509044
          Length = 691

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagcgatgagtcgatgaaacattttagaactagataaacagatgggctgcattagcac 60
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cttatcgatgagtcgatgaaacattttagaactagataaacagatgggctgcattaacac 260

                                                                       
Query: 61  gtggaagtctgtgaaagaatctcaagaaaaagtgcctgctgctgtccatgctacatacag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggaagtctgtgaaagaatctcaagaaaaagtgcctgctgctgtccatgctacatacag 320

                                                                       
Query: 121 cagagctgaccctcgaagacaccctggtatggcaaagaagccattataaaaaatctggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagctgaccctcgaagacaccctggtatggcaaagaagccattataaaaaatctggta 380

                                                                       
Query: 181 ttgacaccaggtgtggcagtccataaccccaacactgaggatactgaggcaggaggatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgacaccaggtgtggcagtccataaccccaacactgaggatactgaggcaggaggatgg 440

                                                           
Query: 241 ctagtttcagactagcttgtgcacttagcaagactgattcaaaaatcc 288
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctagtttcagactagcctgtgcacttagcaagactgattcaaaaatcc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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