BAC Information

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BAC

Clone NameMSMg01-186B18
Chromosome3 (Build37)
Map Location 30,701,003 - 30,701,313
singlet/doubletsinglet
Overlap geneTloc1
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7
Downstream geneGpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186B18.T7 (MSMg01no186_b18.b1)MSMg01-186B18.TJ (MSMg01no186_b18.g1)
ACCAG377896AG377897
length739883
length of high quality
(start - end)		315 (45 - 359)44 (72 - 115)
definitionCHROMAT_FILE: MSMg01no186_b18.b1 PHD_FILE: MSMg01no186_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:00 2005CHROMAT_FILE: MSMg01no186_b18.g1 PHD_FILE: MSMg01no186_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTGTATTCTTGCTACAAGTGAGTAGGAGGCCAACCTGGACTGCT
TGAGATACTGTCTTGAAGAAAGAAAACAAGCATTATTCATCTGAGAACCC
TCTTTAAAATCTGTTTTTAAAGTTAATAATTATCGAATACTTAGAAGTCT
TAGTTGCTGAGTGACTAGAGATGACTAATAAACACTTCAGAAACAAGTTA
TATTTTGGGAGTGGGGCTGAACCAACAATGATACAGGTTCTATTTACTGT
CTTGTACAGTAATTTGTCTGATGAGAATTTTAAAATGTAAACTTCCCTCT
CTGCTTCAAGATATATGTATGCTCCCCCCCCCGAGGGATACTACAGATGC
AGGAACTGGGACACCCCCCCCTTAAAAACTTGTCCAAGGTCATACAGCGA
CCTTTAGTCCAAGGGCTAAAGCTCTAAATGCAACAGTCTCTTTCATACTT
TCTACTTCTGCACCAAATTGTCTACTCCAGCAAATTAATGATGCATTTAT
TGTAGCAAAAGTTAATCTGTATCACCTGCCAATATTACTGCTACGGATAT
TTACTCCCTGAGTCTAAATTTTTTCTAAAATCCCCCTGATTATTTCCCCT
ACTGCGCACCTCTTACCACCTGTTAACTCCACTATTTTTCCATTTCCTCC
TCTCTTTCTGTTTTTTTCTCTCTTTTTTCCCTTCTTGCT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCCCAGAGGAATTCTCTGTTTAACTCTGTGCCCCAACTT
TAAATTGGATTATTTGTGTTCCAAGAAAAAAAGGGAAAAAAGAAAAAAAA
AAAGAAAAAAGGGGGGAGGAGAGGGGGGGGAGGGGGGGGGGGGAAAAGTT
AGCAAACGGCGGCGCGAAGGAGGGAGAAAGGTGAAGGGGGATAAAGAGAG
GAGGACAATTTTTTTTTTAGGGGGAGGGGTTTTATACTTTTTAATTCTCT
CATCTCCGCCGCGAAAAAAAAAAGCCGCCGGAGTTTTTCTAGTTGTGAAA
AGGGGAACAGGGAAGCCCACAAACCGCGAGTTTTTTCGTAATTTTCCCCC
CCCCCCCCCCCGGAGGGGGGGAAGGGGTAGAAGTGGGTGAAGGGTGGGGG
CCCCCCCTTTAAAAAAAAAAAAAAAAGGTGGGGGGGGGGGGGGGGGCGGG
AATCCGGCGGGACATACTCGATATTGTAGCCGTGAAAGATTAGTGGATGC
GGGATTCCTGTGTTGTTTCTTTTGCTTGCCGCCCGCTACCTTATTCTCTC
TTTGCGAATTAGCCGCCGCGGAGATCGCGTATTATGTGGCGGTGGGATTA
TATCGCCGCTGTATGTGACCAGAGGCCGGATATTTTTTAGCCTGTTGGCC
CGGTTTTGTTTCCACAACCTGGTGTGGGTGCGCGTTCGTGTNCCGCCGAA
AACACCCGCCCCTTGTTTGTTTCGCCATAAGGGCGGAAGTAAGGCGGGCC
GCGATGTGTGGTGTGCCCGCTGTAGTACGCGGTGTGTGGCTTACACGTGT
TAATGTTCCCCAGTGTTTGGGTCGTCCCCGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_b18.b1 MSMg01no186_b18.b1 CHROMAT_FILE:
MSMg01no186_b18.b1 PHD_FILE: MSMg01no186_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:00 2005
         (315 letters)



>mm_chr3_30700799_30701513
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtgtattcttgctacaagtgagtaggaggccaacctggactgcttgagatac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtgtattcttgctacaagtgagtaggaggccaacctggactgcttgagatac 264

                                                                       
Query: 65  tgtcttgaagaaagaaaacaagcattattcatctgagaaccctctttaaaatctgttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcttgaagaaagaaaacaagcattattcatctgagaaccctctttaaaatctgttttt 324

                                                                       
Query: 125 aaagttaataattatcgaatacttagaagtcttagttgctgagtgactagagatgactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagttaataattatcgaatacttagaagtcttagttgctgagtgactagagatgactaa 384

                                                                       
Query: 185 taaacacttcagaaacaagttatattttgggagtggggctgaaccaacaatgatacaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 taaacacttcagaaacaagttatattttgggagtggggctgaaccaataatgatacaggt 444

                                                                       
Query: 245 tctatttactgtcttgtacagtaatttgtctgatgagaattttaaaatgtaaacttccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatttactgtcttgtacagtaatttgtctgatgagaattttaaaatgtaaacttccct 504

                      
Query: 305 ctctgcttcaa 315
           |||||||||||
Sbjct: 505 ctctgcttcaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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