BAC Information

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BAC

Clone NameMSMg01-186E06
Chromosome3 (Build37)
Map Location 95,236,364 - 95,236,800
singlet/doubletsinglet
Overlap genenone
Upstream geneOaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305
Downstream geneArnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E06.T7 (MSMg01no186_e06.b1)MSMg01-186E06.TJ (MSMg01no186_e06.g1)
ACCAG378000AG378001
length792749
length of high quality
(start - end)		322 (45 - 366)439 (77 - 515)
definitionCHROMAT_FILE: MSMg01no186_e06.b1 PHD_FILE: MSMg01no186_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:12 2005CHROMAT_FILE: MSMg01no186_e06.g1 PHD_FILE: MSMg01no186_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAACACTGCATACACCATATGATGGTTTATGCCTATAAGCCTAGC
ATACAGGATGCAGAAGCAGAATTAAATATTCAGTGCTACCCTCAGCTGAC
TAGTGAGTTCAGTGTCAATGTGAAATAAATGAAAGCCTGTCTCAATTAAA
AAAAAAATCTGGGAAAGATAAATTCTAGATCATTGGTATCCATAAGGCAC
CGCAATAATAAGCTATTTAAACATAACTTTATGGTTTTGCAAATTCCTTG
TGGTGGCTTAAATGACCCCATTAGGCCCATATGTATGAATGCTTAGTTAT
CAAGGGAGTGGCACTATTTGAGAGGCATTGCCAAGCCGNGGCCTTCCTTA
TTGGAGGAAGCATGATGCCCAACTAAAAGAAAAAAAATAAGGTTTCTTGG
GGCCAAGGCAGGACCTGTGCCTCTCTCTTCCTGCTGCCTGTTGGACCAGA
TGTATAACTTTTATTCTACTTCTCCTTCACCATGTTAGTCTGCTTGTATA
CATTTCACCTGCACTGAAGAAAGTAGTACTGCTGTTCTGTATTCGTTTTA
TATTTATCTTTTATTATGCCGTTATTTTCATATTTCCTTTTGCCTTTATC
ATATATCTTATATGACATTGAATAAATCTCAACGTCACATTATTATTAAA
TTTTGCCTTCTTCTTTTCTTTTTTCATTTTTTTTATTTATTTATTTTTTC
TTTTTATTTTGTTTTCTTATTCGTTATTTATATTCTTTTTTG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTCTCCTTCCAATGTTAGAAC
TATAAGCATATGGCACTACTCTTTGGCTTGTTGTCAGTCTGATTCACCAA
AAAAAATTTTTTTAATTAGCCATAAAGACGACTCCACTACACAGCTACAC
CTAACATCCCAAGATCCAATGCTCTGAACTTACACAAGGAGAGGACTCCT
GCAAATTATCTTCAACTTTCCTCACACCAAAACATGTGCACTCACACATA
CACAAAAATTTTAAAAACATTTAGAAGTAGAACTGACAAGATGGCTCAAG
AGCTAAAGGTACTTGAAGTTGGATTCTCCAAAAGCCACACAATGGTTCGA
GGAGAGAACTAACTCCCATTCACTAAAAAGAGGTGCAGTGAGAGGCGCAG
TCACATCATGCTGGCTTCTCGTTTGTTGGTTGCTTGCTTGCTTTAGGTTA
TTTGGTTGGTTTGNTTAGACATTTTCTTGGNGTTTTGAATAAGTGTATTT
NTNTTTATGAAATTTATTTAATTATATAAATATAAGTATTTATAATAATT
GTTAATAAATTTAAAATAGCTATAATTTATTTTATATTTAATTTTTTACA
TATTTTTTATTTACTATTTATTATAAATTTTATTAATTCACCATTCACGT
AATTAATCACTTTTCATTCCGCTTCTTCTCCTCTATACTTCATCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e06.g1 MSMg01no186_e06.g1 CHROMAT_FILE:
MSMg01no186_e06.g1 PHD_FILE: MSMg01no186_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:12 2005
         (439 letters)



>mm_chr3_95236164_95237002
          Length = 839

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctctccttccaatgttagaactataagcatatggcactactctttggcttgttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 accctctccttccaatgttagaactataagcatatggcactactctttggcttgttgtca 578

                                                                       
Query: 61  gtctgattcaccaaaaaaaatttttttaattagccataaagacgactccactacacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtctgattcaccaaaaaaaatttttttaattagccataaagacgactccactacacagct 518

                                                                       
Query: 121 acacctaacatcccaagatccaatgctctgaacttacacaaggagaggactcctgcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acacctaacatcccaagatccaatgctctgaacttacacaaggagaggactcctgcaaat 458

                                                                       
Query: 181 tatcttcaactttcctcacaccaaaacatgtgcactcacacatacacaaaaattttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatcttcaactttcctcacaccaaaacatgtgcactcacacatacacaaaaattttaaaa 398

                                                                       
Query: 241 acatttagaagtagaactgacaagatggctcaagagctaaaggtacttgaagttggattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acatttagaagtagaactgacaagatggctcaagagctaaaggtacttgaagttggattc 338

                                                                       
Query: 301 tccaaaagccacacaatggttcgaggagagaactaactcccattcactaaaaagaggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tccaaaagccacacaatggttcgaggagagaactaactcccattcactaaaaagaggtgc 278

                                                                       
Query: 361 agtgagaggcgcagtcacatcatgctggcttctcgtttgttggttgcttgcttgctttag 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtgagaggcgcagtgacatcatgctggcttctcgtttgttggttgcttgcttgctttag 218

                            
Query: 421 gttatttggttggtttg 437
           |||||||||||||||||
Sbjct: 217 gttatttggttggtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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