BAC Information

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BAC

Clone NameMSMg01-186H04
Chromosome3 (Build37)
Map Location 76,230,884 - 76,231,195
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186H04.T7 (MSMg01no186_h04.b1)MSMg01-186H04.TJ (MSMg01no186_h04.g1)
ACCAG378130AG378131
length822748
length of high quality
(start - end)
320 (46 - 365)436 (78 - 513)
definitionCHROMAT_FILE: MSMg01no186_h04.b1 PHD_FILE: MSMg01no186_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:26 2005CHROMAT_FILE: MSMg01no186_h04.g1 PHD_FILE: MSMg01no186_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGTTAAGGACTTTGTAGTCTTTCGAACAAAGGAGCACCATTTC
CCATGATTCACTGCTTGCAGCTTGGAGATGATTAAAGTGAGCAAGTCTTT
TATCTTGACTAGAATGGGGTCTTGCTTTATGATTGTGCTAAAGTGTTGCT
GTGTTTCCAAAGTTTCATTATATGTGACTGATTTCCGCCGTTCGTGTGAA
TATATTTTATTGCAAAATGATTTTTTCCAACAAATGTTTTTTTCAAATAT
ACTCCTCTCTTGCTCTGCTCTCTTCTTCAGACTTTTTAAAATCTATCTTA
TCATATGCTGTTTTTTTTTCTCCCCCCCCCCCCCCTCTAATTATGAGGCA
CTTATATATAATTCCTTTCCCCCCCCCCCCTTAAAAATACACTTTCCCCG
CAGGCGTTTTTCTTTTTCCCCCTATCATTTATCTATTTCTTTCTCTTCCC
TTCTCCTCTCAATCACCTTTTACCCTCTCATCATCACCATACACCCTATC
TCACTTCCCCCACAATTTTCCTCCCTCTATTTTCCCCCCGCTCTATAACC
CTCATCCCTTTCATCCTTTTTCTTTTCCACTTCTTTCCCCATTTCGCCTT
ATTTTTTTTTATTTCAATATCTTTCTATTTCTCCCTTTTACTTTCTTTCC
TATTTCCTATCTCTTTTTTCCACCCCCACATAACTATCTTCTACCTCCCT
CTTTCTTTCCCTATCGCCTCCCTTCCCCCCTCCCTTCTTTTTCTTTTGCG
TTTACATCCACCCTCCTCCCTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGATTACCGAATGGC
TGAGAAACACCATTTCTCACCAATGGCTGAGAAAAATGTTCAGCATCCTT
ACTCATCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCATCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAAAGTAGATGCTGGCAA
GGATGTGGAGAAAGAGGAACACTCCTCCGTTGTTGGTGGGATTGTAAGCT
TGTACAACCACTCTGGAAATCAATCAGGCGGTTTCTCAGAAAATTGGACA
TGGTACTACCCGAGGATCCCACAATACCTCTCCTTGGCATATATCCAGAA
AATGTTCCAACTAGTACCCAAGAACCATGCTCCACTTTGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGATAAGAACCCAGATGCCCCTCAATAG
AGGAATGGATACACAAATTGTGGCACATTTACACACTGGAGTACCACTCT
GCTATTAAAAAGAAAGACCTTACAAAAATCCTAGGTTTATGGTTGGACCC
GGAGGGCTTTACCCCGAGTGGAGGCACCCATTCTAACCTTATATCACCCG
ATATGACTTCCCTGGTATCTGTTTATATGCCCCGAGTTTTATAATGCTCT
TAAAGAAACGTCCCCTCCGGATATTTTCGTATTTTCTGTCTCACCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_h04.b1 MSMg01no186_h04.b1 CHROMAT_FILE:
MSMg01no186_h04.b1 PHD_FILE: MSMg01no186_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:26 2005
         (320 letters)



>mm_chr3_76230680_76231399
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgttaaggactttgtagtctttcgaacaaaggagcaccatttcccatgattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgttaaggactttgtagtctttcgaacaaaggagcaccatttcccatgattc 264

                                                                       
Query: 65  actgcttgcagcttggagatgattaaagtgagcaagtcttttatcttgactagaatgggg 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgattgcagcttggagatgattaaagtgagcaagtcttttatcttgactagaatgggg 324

                                                                       
Query: 125 tcttgctttatgattgtgctaaagtgttgctgtgtttccaaagtttcattatatgtgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgctttatgattgtgctaaagtgttgctgtgtttccaaagtttcattatatgtgact 384

                                                                       
Query: 185 gatttccgccgttcgtgtgaatatattttattgcaaaatgattttttccaacaaatgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatttccgccgttcgtgtgaatatattttattgcaaaatgattttttccaacaaatgttt 444

                                                                       
Query: 245 ttttcaaatatactcctctcttgctctgctctcttcttcagactttttaaaatctatctt 304
           |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||
Sbjct: 445 ttttcaaatatactcctctcttgctctgctctcagctacagactttttaaaatctatctt 504

                       
Query: 305 atcatatgctgt 316
           ||||||||||||
Sbjct: 505 atcatatgctgt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)