CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGACCATGTTATTTTCATGGCCTGAGAATAATTTATAAACAAAC
CCAGGAATGAATATCATGTTTCCTTCTGACCCTTTGTCGGAACCAAGAAG
TTGCAAGCTCTTATGTAGAGCCTATTCACAGATTTTTTGAAGGTAGGGAG
ACTATCATTCTAAGCAAACAAAAAAATTCAGGAGCAATTATCAAGCACAA
ACTAGGCCAGAGAGAAAGACGATTCCAAATGAAGGTACCAAAACTAAGAG
TCCTGTGCTGACCCTGGCTGGTTCTGGATATTTTCCCAAAAGCCTTTGTT
TTGAGTCTCACCTCATGTTGCCATCTCCTGGACATAGCTTTGTAGTCCAT
CACTCAAGGTGACTATAACCCTCTTTTCTTTCTTTATGCTGCTTTCTGAA
CTACGTGTTTCTGAGATATTGGCCTCTAGATACTGCTAAATTGCCTGAGA
CTGATCATTTCAACATGATACGTCTATACTTGTTCCCATGGGAATAATAA
AATAGTTTCTTTAAAAAATAGTGTATATGTATATATGTATACTTAGATGT
ATTTTATGGCATGATCTTATGTATACTCTTACCCTTGAAATTCCTCCTCC
TGCTTTTCCCGAGCTGAGAATACTTGTCTGCGCCATTGCGGTCCCCTAAA
AACTCCTTTTTTTTGGACTTCTCCCGCCGACCTG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAATTGTGATTTAGGAGTA
CCGCCTCTGGGTGGGGATTTGTGCCCGACAAGTCCTGGTTTTCCCGCCTC
GAAGACAGAACCTTGCTCACCTGAGTCCTATGCTTCATTGCCCCGAGATC
TATCCATTTTTATCATTTTGCATACTCCATGCTGCTGTCCTGTCCACCCA
CCTTGTCTCCCACTGCCGATTATCCTTTTTCCCGCCGAACCCCCCCCGAT
TTAATTTCTGGCTCCTCCCTCTTTTTTTTTTTTTTCCTTTGACCCCCCTA
CCCCCTTTACCCTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCGTAAATTC
CTCACTCCTCTCTCCCCCCATGTTGTCCCCCCCCCCCCACAATAACAAAT
CCCTTTTCTCCGCCCATTCTCTCCTCATTCACCCACTTTTCCCGCTTTTC
AATCCCAGGTGCGTCTTTTCTTCTTCATCTTTATTTCCCCCGCTCTCCTT
TTCTCCCTCCCGCTAGCCGCCCGTCCAATTCCCCATTTTTTCTCCCCCTT
TTCCTCTCCCCTCTTGTACACATTATCCGCGTTTTTCTACTTCCCCATTT
TCCCCTTTCGTTTCACCTCTTTTTCTTCCTCCCTCCTTTTCCCCCCCTTT
TCCCCCACCCTTTCTCCTTCCTCTTTATACTTTTTTTACGCCCCCCCTAT
TACTTTTCTCCTCTTCTATCCCCTTTCCCCCTACACACCTTTTCCCTCCT
TGTCTTCCCCCCCCC

Query= MSMg01no186_l06.b1 MSMg01no186_l06.b1 CHROMAT_FILE:
MSMg01no186_l06.b1 PHD_FILE: MSMg01no186_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:46 2005
         (566 letters)



>mm_chr3_81556254_81557220
          Length = 967

 Score = 1027 bits (531), Expect = 0.0
 Identities = 555/563 (98%), Gaps = 1/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaccatgttattttcatggcctgagaataatttataaacaaacccaggaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaccatgttattttcatggcctgagaataatttataaacaaacccaggaatg 264

                                                                       
Query: 65  aatatcatgtttccttctgaccctttgtcggaaccaagaagttgcaagctcttatgtaga 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatcatgtttccttctgcccctttgtcggaaccaagaagttgcaagctcttatgtaga 324

                                                                       
Query: 125 gcctattcacaga-ttttttgaaggtagggagactatcattctaagcaaacaaaaaaatt 183
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 gcctattcacagatttttttgaaggtaggaagactatcattctaagcaaacaaaaaaatt 384

                                                                       
Query: 184 caggagcaattatcaagcacaaactaggccagagagaaagacgattccaaatgaaggtac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggagcaattatcaagcacaaactaggccagagagaaagacgattccaaatgaaggtac 444

                                                                       
Query: 244 caaaactaagagtcctgtgctgaccctggctggttctggatattttcccaaaagcctttg 303
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 445 caaaactaagagtcctgtgctgaccctggctagttctggatatttccccaaaagcctttg 504

                                                                       
Query: 304 ttttgagtctcacctcatgttgccatctcctggacatagctttgtagtccatcactcaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttgagtctcacctcatgttgccatctcctggacatagctttgtagtccatcactcaag 564

                                                                       
Query: 364 gtgactataaccctcttttctttctttatgctgctttctgaactacgtgtttctgagata 423
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgactataagtctcttttctttctttatgctgctttctgaactacgtgtttctgagata 624

                                                                       
Query: 424 ttggcctctagatactgctaaattgcctgagactgatcatttcaacatgatacgtctata 483
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggcctctagatactgttaaattgcctgagactgatcatttcaacatgatacgtctata 684

                                                                       
Query: 484 cttgttcccatgggaataataaaatagtttctttaaaaaatagtgtatatgtatatatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgttcccatgggaataataaaatagtttctttaaaaaatagtgtatatgtatatatgt 744

                                  
Query: 544 atacttagatgtattttatggca 566
           |||||||||||||||||||||||
Sbjct: 745 atacttagatgtattttatggca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space:   532092
Effective search space used:   532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)