BAC Information

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BAC

Clone NameMSMg01-187H21
Chromosome3 (Build37)
Map Location 147,031,958 - 147,032,246
singlet/doubletsinglet
Overlap genenone
Upstream geneSsx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187H21.T7 (MSMg01no187_h21.b1)MSMg01-187H21.TJ (MSMg01no187_h21.g1)
ACCAG378822AG378823
length776743
length of high quality
(start - end)
320 (46 - 365)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no187_h21.b1 PHD_FILE: MSMg01no187_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:49 2005CHROMAT_FILE: MSMg01no187_h21.g1 PHD_FILE: MSMg01no187_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCACACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCAT
CCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTT
AATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCAT
CGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCT
TTCTGTGGTTTATTTTTTCTTACCCCCCCCCCCTTCATAAAATGAGTTGG
ATAGAGTACCTTCTACCCCCCTTTTGTAAAATAATTTGTGCAGAACTGGA
ATTAGATCTTCTTTGAAGGTCTGGCAGAACTCTGCATTATTCCCATCTGT
TCCTGGGTTTTTTCTGGTTGTACACACTATCATCACCTGCCTTCTATTTT
TTTACCCGCTATGCTATCTGTTTTATATGTTTTTTTTTTCCCCTGATCCC
CCTTTTCCCATTTTCCCCCCCTTCCTATATCCCCCCTCCTCTTTTCTATT
CTTTTCTCCCTTTTCTTCCCCCACCCTCTTTTCCCCTCCCCCACCACCCC
TTCTTTTTTTACACCTCTTCCACTTCCACACCTTTTTCCCCTTTTTATTT
CATTCTCTCTCCCCTCCTTTTCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGTATAGAGTTATTGCAAG
AGGCTAACTTAAAATAGTCTTAGGAAAAGTAGCTGGATTGAGATTAGGAG
GTGTTGTATAAAAGAGTGGGTCTCAAAGCTTAAGGCAGATGAATAAACAC
ATGTGGGTGAGAGGAATACATTGACAAGCCTGGAGTTGATATCAAAACAG
GCTTTGTACGTGTGAAGATGCCCTATAGGATGCACTGTTGAGAACCCAGG
ACACAGGGTGAAGGCAGAACACACAGTGACTAGGGTGTGGCTCGCAGAAA
GAACTTCATAGGGCAGTGTTTCTTCCCCCCCCCCCGCCCCTTTATAATTC
ACCTTGAAATCTTAATTTGGCCCCCCCATCTCTTTCCAGAGGTTTTTTTC
ATCAATCTTTTTTTTTTCTCATGTCAAGACAAACTGAGGTTATTAATCTT
TCCCAGACACTGTGATGTTTGACACATATTGTATTACTAGGATAAATGGA
ATTATTAATAGAAATTCCTGGGAACCTGAAGGCTCCTGGGATGTATATTT
ACAAAGACCGAGACTGGATTATTTTATTTTCTGTATCGGCTTTTATCACA
TGAAAAGATTGTTGCAGCCTCGGAGCCTATGCTGGATCCGGGCAGCATTT
GATGTATCTGTTGCTTGTTGACCTTTACCTCAATCTAGCTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_h21.g1 MSMg01no187_h21.g1 CHROMAT_FILE:
MSMg01no187_h21.g1 PHD_FILE: MSMg01no187_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:49 2005
         (293 letters)



>mm_chr3_147031758_147032450
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagtatagagttattgcaagaggctaacttaaaatagtcttaggaaaagtagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagtatagagttattgcaagaggctaacttaaaatagtcttaggaaaagtagctgg 260

                                                                       
Query: 61  attgagattaggaggtgttgtataaaagagtgggtctcaaagcttaaggcagatgaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgagattaggaggtgttgtataaaagagtgggtctcaaagcttaaggcagatgaataa 320

                                                                       
Query: 121 acacatgtgggtgagaggaatacattgacaagcctggagttgatatcaaaacaggctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatgtgggtgagaggaatacattgacaagcctggagttgatatcaaaacaggctttg 380

                                                                       
Query: 181 tacgtgtgaagatgccctataggatgcactgttgagaacccaggacacagggtgaaggca 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacgtgtaaagatgccctataggatgcactgttgagaacccaggacacagggtgaaggca 440

                                                            
Query: 241 gaacacacagtgactagggtgtggctcgcagaaagaacttcatagggca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacacacagtgactagggtgtggctcgcagaaagaacttcatagggca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)