BAC Information

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BAC

Clone NameMSMg01-188E01
Chromosome3 (Build37)
Map Location 152,544,866 - 152,644,990
singlet/doubletdoublet
Overlap geneSt6galnac5
Upstream geneLOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188E01.T7 (MSMg01no188_e01.b1)MSMg01-188E01.TJ (MSMg01no188_e01.g1)
ACCAG379330AG379331
length777825
length of high quality
(start - end)
277 (58 - 334)224 (132 - 355)
definitionCHROMAT_FILE: MSMg01no188_e01.b1 PHD_FILE: MSMg01no188_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:50 2005CHROMAT_FILE: MSMg01no188_e01.g1 PHD_FILE: MSMg01no188_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,644,736 - 152,644,990)(152,544,866 - 152,545,089)
sequence
ATTTTGTTGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCGCACATTATCCGAGCCCAAAATGAAGACCCTG
ATGGTGAGTCTGTTGTTCCAACTCTGCCAATTAGACCCAAAGACCCCTGG
GATTCTGGGTCTCCTAGACTGTTGGGGAAGCCTCTCCGGGTATCTATCTC
TGTGCCAAGAGGTCACCTGTCATTGGTGACAACTTTCTACCTGGCTTGGA
ATCCGGGATGGGCGCTAGGGATGCCTGGGCTCCTGGATCTTTAGCGAGTG
ATCCAAGGGTCGACTGGAGAGCAGAGGAGCAGGCTGATCTCTCCAGGGAT
GGAGGGTGTCCCACTGTGACCGTTGTTTTTTCCCTCCCACCCCCCGCGAG
GAAGCACCATCATTGACTTTCTTGGTTCCCTTGCCAGATAATAAAACTTA
CTGGGGATCTCTGCATGAAGCCCTCTTGTTGTCGATAACATAGTGCGCTT
GTAGGGCTGGAATCCGAGCAGTTTATCTGCATACTAGATCCTCCCTCCCC
CATCACTCTGTCTGTACCGCGCCACTTTCTGTACTGGCCTCCGCGCGCCA
TCTGTCCTCTATTGTTGATACGCTTTCCTAGTACAAGCGATGTCCAAATC
ATTCCTGAACGGTTGCCTTAGAATCGTGTTTACTTTTGCATTATCTGACT
TGCAGTTTCTAGTTCGGCCCCTCCCTGTCTCATTACCTGCCGCTTGCTTG
TCCCTATACTTTCTCCTATCCTTCCCT
NCCCCCCCCNTTTTTTTCNNTTTNNNTAACCTAACNACTTATTCNNNTTC
CCTATGATATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGGCCTCGCTCCTGC
CAGTCACCCCAGGGACATGCTTCCAAGCATATGTAAAGCATGGTTAAAAC
CATATAACAATAGTTATAAGTCCTTACGTTAAGGGATTGGATGGAAAACT
GTTCCCTTTGCTCTTTCTTCCACATAACCTGATTATTATTGTAATTGCAC
ACGTAAAACCTTCTAATCACAAAACACGTGTGAAGTTCACATGTTCACAT
GCTCAGAACACTCATAAGGCACCAAATGGCAAATGTTTTGGGGGCAGGGA
CATGGCTCCTTAATTTTTGCCACCCACCCCTCCACGCGATGGCTGTCACA
AAGTGGGCACCTTAACACACACTGTTGATAAAAAAAAAAAATGGAATCTC
TACCTCATGCGATCCCACAGTTCACATACAGTCGCCCCCAGTACCCCTTA
ATGTCAAACCCCCCTACATTGGACAATTGCACCTGTTCCATATTGCGGCT
ACCCACGCTGAGGTTCTCAAACCTGTCCCCGACTGTTAACCATGTAACCT
TGCAACCCTCATCTGCTAAGGATTCTAAGCCCCCCTTTTCTCCGGTTAAG
TATGCCTCACCACACTTCCAATAAAATCCCCCCCCCCAGTCTTTCCCTGT
ACAACCCCATGCTTCGCATGGCCTGGCATTTAAACTCATTTACCTCCGCT
CTTAAAATTTTCCGCCCCCTGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_e01.b1 MSMg01no188_e01.b1 CHROMAT_FILE:
MSMg01no188_e01.b1 PHD_FILE: MSMg01no188_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:50 2005
         (277 letters)



>mm_chr3_152644514_152645190
          Length = 677

 Score =  447 bits (231), Expect = e-130
 Identities = 249/255 (97%)
 Strand = Plus / Minus

                                                                       
Query: 23  gagcccaaaatgaagaccctgatggtgagtctgttgttccaactctgccaattagaccca 82
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||
Sbjct: 477 gagcccaaaatgaagaccctgatggtgagtctgttgttccaactctgccaagcagaggca 418

                                                                       
Query: 83  aagacccctgggattctgggtctcctagactgttggggaagcctctccgggtatctatct 142
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 417 aagacccctgggattctgggtctcctagaccgttggggaagcctctccgggtatctatct 358

                                                                       
Query: 143 ctgtgccaagaggtcacctgtcattggtgacaactttctacctggcttggaatccgggat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgtgccaagaggtcacctgtcattggtgacaactttctacctggcttggaatccgggat 298

                                                                       
Query: 203 gggcgctagggatgcctgggctcctggatctttagcgagtgatccaagggtcgactggag 262
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 297 gggcgctagggatgcctgggctcctggatctttagcgagtgatccaaggggcgactggag 238

                          
Query: 263 agcagaggagcaggc 277
           |||||||||||||||
Sbjct: 237 agcagaggagcaggc 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no188_e01.g1 MSMg01no188_e01.g1 CHROMAT_FILE:
MSMg01no188_e01.g1 PHD_FILE: MSMg01no188_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:51 2005
         (224 letters)



>mm_chr3_152544666_152545289
          Length = 624

 Score =  379 bits (196), Expect = e-110
 Identities = 217/224 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctggcctcgctcctgccagtcaccccagggacatgcttccaagcatatgtaaagcat 60
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctggcctcgttcctgccagtaaccccagggacatgcttccaagcatatgtaaagcat 260

                                                                       
Query: 61  ggttaaaaccatataacaatagttataagtccttacgttaagggattggatggaaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ggttaaaaccatataacaatagttataagtccttacgttaagggagtggatggaaaactg 320

                                                                       
Query: 121 ttccctttgctctttcttccacataacctgattattattgtaattgcacacgtaaaacct 180
           ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||
Sbjct: 321 ttccctttgctctttcttccacataacctgattattattgtagctgcacacataaaacct 380

                                                       
Query: 181 tctaatcacaaaacacgtgtgaagttcacatgttcacatgctca 224
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tctaatcacaaaacacatgtgaagttcacatgttcacatgctca 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)