Query= MSMg01no188_f16.b1 MSMg01no188_f16.b1 CHROMAT_FILE:
MSMg01no188_f16.b1 PHD_FILE: MSMg01no188_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:59 2005
(320 letters)
>mm_chr3_44176583_44177304
Length = 722
Score = 578 bits (299), Expect = e-169
Identities = 311/315 (98%), Gaps = 2/315 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaa-tatactcttcacaatgagccaggatggcgatcgactttagttcagaatt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaatatactcttcacaatgagccaggatggcgatcgactttagttcagaatt 264
Query: 64 aatggattcaaaactctcatttttagtctgtacacaaaatatgaggccactggacccaag 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 aatggattcaaaactctcatttttagtctgtacacaaaatgtgaggccactggacccaag 324
Query: 124 aggtgcacagacacagttggtttgggataaacattcctaaagccaacaggagtgatgctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 aggtgcacagacacagttggtttgggataaacattcctaaagccaacaggagttatgctg 384
Query: 184 aagctatttcccaaagcactggcatcaatgctatgagacagaaacactgccagaagaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctatttcccaaagcactggcatcaatgctatgagacagaaacactgccagaagaatt 444
Query: 244 tgcttcagaccctcagagaaacacctgcatatctggctgcatttcctgtaaaaaaaa-tg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 tgcttcagaccctcagagaaacacctgcatatctggctgcatttcctgtaaaaaaaaatg 504
Query: 303 tctgcataataatta 317
|||||||||||||||
Sbjct: 505 tctgcataataatta 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_f16.g1 MSMg01no188_f16.g1 CHROMAT_FILE:
MSMg01no188_f16.g1 PHD_FILE: MSMg01no188_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:59 2005
(289 letters)
>mm_chr3_44302402_44303090
Length = 689
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%)
Strand = Plus / Minus
Query: 1 ctcctttaatctcctgttataatttatggttgataggagacttgtgtactaaggttttga 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 489 ctcctttaatctcctgttataatttatggttgataggagacttgtgtattaaggttttga 430
Query: 61 gtcaaatggaaaaaatattcctgaaatctagatgactgttaattgaaattttacaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtcaaatggaaaaaatattcctgaaatctagatgactgttaattgaaattttacaaattt 370
Query: 121 attaaattcggtaagggatcacaatattataaatatttgagagtatataattatagcagc 180
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 369 attaaattcggtaagggatcacactattataaatatttgagagtatatcattatagcagc 310
Query: 181 tgaacagaaacactatttgaacatgaatcattttacttatttctgacccaaagaaatttc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgaaaagaaacactatttgaacatgaatcattttacttatttctgacccaaagaaatttc 250
Query: 241 ataccttcagcatgaatatcttagtacatacaggtataaaaatacacat 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ataccttcagcatgaatatcttagtacatacaggtataaaaatacacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
