Query= MSMg01no188_f17.b1 MSMg01no188_f17.b1 CHROMAT_FILE:
MSMg01no188_f17.b1 PHD_FILE: MSMg01no188_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:59 2005
(317 letters)
>mm_chr3_146027038_146027754
Length = 717
Score = 476 bits (246), Expect = e-139
Identities = 284/314 (90%), Gaps = 27/314 (8%)
Strand = Plus / Plus
Query: 4 ggaattcagagccatcctcagctatatagagaatttgagacaagcctgagtgattgtctc 63
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggaactcagagccatcctcagctatatagagaatttgagacaagc--------------- 275
Query: 64 aaaaagacaagcaatgaataaataaaagagataccatgtttcattttagtagtatttgtc 123
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ------------aatgaataaataaaagagataccatgtttcattttagtagtatttgtc 323
Query: 124 tgtagagtaacttggtgtgtggttgacactatgtttcattttaatggtatttgtctgtag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtagagtaacttggtgtgtggttgacactatgtttcattttaatggtatttgtctgtag 383
Query: 184 aataactttgtgtgtagtttgatctcagtctctttgtgttgatcactttcacttgaaatc 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 aataactttgtgtgtagtttgatctcagtctctttgtgttgatcacttttacttgaaatc 443
Query: 244 atttcagggtagcttatatcacatccgtgatgattttcagaatcaaaatgaagtcagctc 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 atttcagggtagcttatatcacatccgtgatgattttcagaatcaaaataaagtcagctc 503
Query: 304 taaaagtacctgta 317
||||||||||||||
Sbjct: 504 taaaagtacctgta 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_f17.g1 MSMg01no188_f17.g1 CHROMAT_FILE:
MSMg01no188_f17.g1 PHD_FILE: MSMg01no188_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:59 2005
(288 letters)
>mm_chr3_146080298_146080985
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Minus
Query: 1 ctctttggtggtgtcggctggacgcactcacctgtacacagaactggatctgtcacagtc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctctttggtggtgtcggctggactcactcacctgtacacagaactggatctgtcacagtc 429
Query: 61 atccaatctcccatagcaagttccagagccaggatacctgaggaggcggctcagtgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atccaatctcccatagcaagttccagagccaggatacctgaggaggcggctcagtgctgc 369
Query: 121 gacgcttacaacagctcctgtcactctcctacgtgaggcggctcagtgctgcgacgctta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 368 gacgcttacaacagctcctgtcactctcctacgtgaggcggctcagtgctgcgatgctta 309
Query: 181 caacagctcctgccactctcctacgtgagcatctccttagaaggcaaaggacagagacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgacagctcctgccactctcctacgtgagcatctccttagaaggcaaaggacagagacat 249
Query: 241 caaacttaaaagatgaagcccagtgaaagccaatgtacaaagcatttg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caaacttaaaagatgaagcccagtgaaagccaatgtacaaagcatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
