Query= MSMg01no189_e07.b1 MSMg01no189_e07.b1 CHROMAT_FILE:
MSMg01no189_e07.b1 PHD_FILE: MSMg01no189_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:12 2005
(313 letters)
>mm_chr3_45119546_45120258
Length = 713
Score = 543 bits (281), Expect = e-159
Identities = 303/313 (96%), Gaps = 5/313 (1%)
Strand = Plus / Plus
Query: 6 aattcatccacttttattgtctaattgctctggctccaggtctgtctgcctgttgatatg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aattcatccacttttattgtctaattgctctggctccaggtctgtctgcctgttgctatg 260
Query: 66 gacttcattatccttgtcatggatttaccttctgaactgtaagatacaataaactgtttt 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttcattatgattgtcatggatttaccttctgaactgtaagatacaataaactgtttt 320
Query: 126 gttttgttttgtttt-----actttgattcagttatggtgtcttatcgtagaacaaaaat 180
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gttttgttttgttttgttttactttgattcagttctggtgtcttatcgtagaacaaaaat 380
Query: 181 gtaataagacatgtatcattattgctgcttcagtaagctagaaatgctagtacatggtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaataagacatgtatcattattgctgcttcagtaagctagaaatgctagtacatggtac 440
Query: 241 cttcccatggtgcaaaattaacaccagtacataaatttcacctctattagaaagagcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccatggtgcaaaattaacaccagtacataaatttcacctctattagaaagagcctg 500
Query: 301 atatagctgtctc 313
|||||||||||||
Sbjct: 501 atatagctgtctc 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_e07.g1 MSMg01no189_e07.g1 CHROMAT_FILE:
MSMg01no189_e07.g1 PHD_FILE: MSMg01no189_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:12 2005
(292 letters)
>mm_chr3_45235063_45235755
Length = 693
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 1 tctaaatagttactggagctagatagaacaaacaacaatgtacatcatgtatattggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctaaatagttactggagctagatagaacaaacaacaatgtacatcatgtatattggagg 432
Query: 61 tccacaagcccaatgcacattcaataagggtaaagtttttgaagaaaaaaaaaaaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 tccacaagcccaatgcacattcaataagggtaaagtttttgaagaaaaaaaaaaaagaaa 372
Query: 121 aaaattattctaaaagtgacatttaagcaaatgaatggtatttggtgtgatttttgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaattattctaaaagtgacatttaagcaaatgaatggtatttggtgtgatttttgtggt 312
Query: 181 tgctttattatg-aaaaaaatacattgattacatttgcagttctgatcattaattcaaaa 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgctttattatgaaaaaaaatacattgattacatttgcagttctgatcattaattcaaaa 252
Query: 240 tatgattcatcctcaaacatattaactctttccagcagagacatagtaata 290
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatgattcgtcctcaaacatattaactctttccagcagagacatagtaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
