BAC Information

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BAC

Clone NameMSMg01-190F03
Chromosome3 (Build37)
Map Location 137,080,657 - 137,080,941
singlet/doubletsinglet
Overlap geneEmcn
Upstream genePpp3ca, LOC668870, LOC100039447
Downstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F03.T7 (MSMg01no190_f03.b1)MSMg01-190F03.TJ (MSMg01no190_f03.g1)
ACCAG380707AG380708
length707830
length of high quality
(start - end)
316 (46 - 361)281 (130 - 410)
definitionCHROMAT_FILE: MSMg01no190_f03.b1 PHD_FILE: MSMg01no190_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:32 2005CHROMAT_FILE: MSMg01no190_f03.g1 PHD_FILE: MSMg01no190_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
CTCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTATCTTATTGACGGTGTCTTTTGCCTTGTAGAAGCTTTGCAACTTTATG
AGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTT
CTCCTCTATAAGTTTCATTGTCTCTGGCTTTATGTGGAGTTCCTTAATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCTCATT
CTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCT
ACTTGTCTGTTACTATACCAGTACCATGCAGTTCTTTTTATCACAATTGC
TCTGCAGTACAGCTTTAGGTCAGGCATGATGATTCCACCAGAGGTTCTTT
TATCCTT
TAATTCCCCTCACTTATCTTTAAATATANNNGNGGGNNATTTAAAAAAAA
TAATCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGATTATTTTTGTTTCA
GTAAAACCATTTCATTGAATGATATATCCCCCAAAGAACTGACTCGTTGA
TTAATGCCATTTTTATTTTGAAATACTAATAATGTCACACAAAATCCATC
TTAAAGTGTGCTTAACCATTGACTCTTTCTTTTTCTTGTTTCTTTTTTCC
TTGCCCAAAAGTTGGTTATTTTATTTATTAACATTTCAAATGTTATCTCC
CTTTCTGGTTTCCCCTCCACAAACCCCCTATCCATCCTCCTTACCCACTG
CTTCTATAAGGNGTTCCTTTTTTTATCCACCCACCCCCACCTCAGCAGCC
TAGCATTCCACTGATCTGGGGCATGCAACCTTCAAAAAAAAAAGGACCTC
TCCTCCCATTGATGCCAAATAAGGCCATCCTTTGCTATATACGCAGTTGT
AGCTATGGTTCCCTCCCACGTATACCCTTTGTTTGCTGGTCTACTCTCTG
GTAGATACTGCAACTCTCGCTCGTTTACGCTTTTCTCAACAAGTCCAAAA
AACAACCCACTATTATTTCTATATATTAAATTTAAATATTACTTTTACAC
CAACCATCAATTAGTTTAACACAATCTTACATTATCCCCATTCCCTCACT
CCCACCATATCATAACACCCCTTATATTCCACACATCATAACCACTAAAA
CAACAACACCAACTTAATATAACAAACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f03.g1 MSMg01no190_f03.g1 CHROMAT_FILE:
MSMg01no190_f03.g1 PHD_FILE: MSMg01no190_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:32 2005
         (281 letters)



>mm_chr3_137080457_137081137
          Length = 681

 Score =  464 bits (240), Expect = e-135
 Identities = 273/286 (95%), Gaps = 6/286 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgattatttttgtttcagtaaaaccatttcattgaatgatatatcccccaaagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||
Sbjct: 201 catgtgattatttttgtttcagtaaaaccatttcattgaatgatatatcacagaaagaac 260

                                                                       
Query: 61  tgactcgttgattaatgccatttttattttgaaatactaataatgtcacacaaaatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactcgttgattaatgccatttttattttgaaatactaataatgtcacacaaaatccat 320

                                                                       
Query: 121 cttaaagtgtgcttaaccattgactctttctttttcttgtttcttttttccttgcccaaa 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||
Sbjct: 321 cttaaagtgtgcttaaccattgactctttctttgtcttgtttcttttttccttgtttaaa 380

                                                                       
Query: 181 agttggttattttatttattaacatttcaaatgttatctccctt----tc-tggtttccc 235
           ||||||||||||||||||||||||||||||||||||||||||||    || |||||||||
Sbjct: 381 agttggttattttatttattaacatttcaaatgttatctcccttcccttcctggtttccc 440

                                                         
Query: 236 ctccacaaaccccctatccatcctccttacccactgcttctataag 281
           |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctccacaaaccccc-atccatcctccttacccactgcttctataag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)