Query= MSMg01no190_f23.b1 MSMg01no190_f23.b1 CHROMAT_FILE:
MSMg01no190_f23.b1 PHD_FILE: MSMg01no190_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:36 2005
(666 letters)
>mm_chr3_82137757_82138817
Length = 1061
Score = 1129 bits (584), Expect = 0.0
Identities = 641/662 (96%), Gaps = 5/662 (0%)
Strand = Plus / Plus
Query: 5 gaattcagactgcatttaaattttggatgacagaaaaatgcatacagcagtattgcttac 64
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 205 gaattcagactgcatttaaattttggatgacag-aaaatacatacagcagtattgcttac 263
Query: 65 atttgagtatgtcagcttctggaggtacattgtctccatatgaatgttggagatatattg 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttgagtacgtcagcttctggaggtacattgtctccatatgaatgttggagatatattg 323
Query: 125 gaagaaatgaaagtaggaggaagacgggacatgaaaaggcaaacaaaggcagagctggtg 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 gaagaaatgaaagtaggaggaagatgggacatgaaaaggcaaacaaaggcagagctggtg 383
Query: 185 aaagagggagaacttagagtataaagtatccagtctgaactgtaaggctccagtatcacg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagggagaacttagagtataaagtatccagtctgaactgtaaggctccagtatcact 443
Query: 245 agtttctttgtatcaggcacagtgctggaccacagccgtccagccccacagcaagctacc 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttctttctatcaggcacagtgctggaccacagccgtccagccccacagcaagctacc 503
Query: 305 cagcctactcttcctgcgtccctgtgccaggtcagcacctcctcactgctcctctcttta 364
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 cagcctactcacccagcgtccctgtgccaggtcagcacctcctcactgctcctctcttca 563
Query: 365 ggaccggatgatccaggaaagagataggtgctttataaggaagagtgcagcggggcctca 424
| |||||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||
Sbjct: 564 gaaccggatgatccaggagagagatgggtgctttacaaggaagagtgcagtggggcctca 623
Query: 425 ctgcagggaaaggtgtgattgtgcctacaggattgagtcaagagaagattccagaaagac 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcggggaaaggtgtgattgtgcctacaggattgagtcaagagaagattccagaaagac 683
Query: 485 agttactaaacgtgaatataagtataaaaactgtgcaaactataaacactgtataaaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agttactaaacgtgaatataagtataaaaactgtgcaaactataaacactgtataaaaac 743
Query: 545 atacaataattcacactttcttcatatgggcttcaggtcaaatacatttccttgcatgca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atacaataattcacactttcttcatatgggcttcaggtcaaatacatttccttgcatgca 803
Query: 605 attatttaacatacatacaagaaaagaaattctagatatttgttgagtcccatggggcat 664
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 804 attatttaacataca----agaaaagaaattctagatatttgttgagtcccacggggcat 859
Query: 665 tt 666
||
Sbjct: 860 tt 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1061
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1051
Effective search space: 689456
Effective search space used: 689456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_f23.g1 MSMg01no190_f23.g1 CHROMAT_FILE:
MSMg01no190_f23.g1 PHD_FILE: MSMg01no190_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:36 2005
(631 letters)
>mm_chr3_82144812_82145841
Length = 1030
Score = 1189 bits (615), Expect = 0.0
Identities = 627/631 (99%), Gaps = 1/631 (0%)
Strand = Plus / Minus
Query: 1 agagtgcaaaattcttaaaaaatagcatttcatttattactgcatttatttttttatatt 60
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 830 agagtgcaaaattcttaaaaaatagcatttcattaattactgcattta-ttttttatatt 772
Query: 61 gcatagtcaagcccttcattgtgatgtacagcttattaatattgttcagtaaaggctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gcatagtcaagcccttcattgtgatgtacagcttattaatattgttcagtaaaggctttt 712
Query: 121 aaaatctattcataacatttttctaaaaatatttgggagaaataatgatttcctttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaaatctattcataacatttttctaaaaatatttgggagaaataatgatttcctttaaaa 652
Query: 181 cactgtagttttgatttcacagttttttaatttgtttttttttcttcttcagaacttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cactgtagttttgatttcacagttttttaatttgtttttttttcttcttcagaacttcca 592
Query: 241 atttttctgaatctcttcataagagaaacacaaatcagcttattacactgaaagtcattt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aattttctgaatctcttcataagagaaacacaaatcagcttattacactgaaagtcattt 532
Query: 301 caatatgtccaatttgcattcccacatttgaaaaatcacacattcgacttaagttttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 531 caatatgtccaatttgcattcccacatttgaaaaatcacacattcgacttaagttttctt 472
Query: 361 tcattgatctttctggcttcctctaaataatacaaaatgacatgtatatttttagatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcattgatctttctggcttcctctaaataatacaaaatgacatgtatatttttagatgct 412
Query: 421 tcttagctatgcttcccagaaaacttgcctcatttggaagattttatctttaaaaaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcttagctatgcttcccagaaaacttgcctcatttggaagattttatctttaaaaaaata 352
Query: 481 aaagcacatatagacccagtagagtgtctaaagacttaacatcctaacaacttttcatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaagcacatatagacccagtagagtgtctaaagacttaacatcctaacaacttttcatct 292
Query: 541 attccaaaacttcgtgcttcaagagtagctgtagaaatatctattttcttaatatgaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attccaaaacttcgtgcttcaagagtagctgtagaaatatctattttcttaatatgaatg 232
Query: 601 ttttcccctatcctcagcataggcactcaag 631
|||||||||||||||||||||||||||||||
Sbjct: 231 ttttcccctatcctcagcataggcactcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
