BAC Information

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BAC

Clone NameMSMg01-190G16
Chromosome3 (Build37)
Map Location 24,708,561 - 24,708,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G16.T7 (MSMg01no190_g16.b1)MSMg01-190G16.TJ (MSMg01no190_g16.g1)
ACCAG380770AG380771
length691693
length of high quality
(start - end)
312 (45 - 356)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no190_g16.b1 PHD_FILE: MSMg01no190_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:39 2005CHROMAT_FILE: MSMg01no190_g16.g1 PHD_FILE: MSMg01no190_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGAATAAGTCGCATTTTATTAATATCAGTATGCATACTTTAAGT
TCTTTTGCTCTAAAGAACCCTAAGTAATGCTCTAATTAAAAAGATGTGGG
AAGAAATAAACAAGTCCCTTTCCTGAATTTGAAAAAGAGGCCAATATGGA
TAAAGTTACAATTAAATTAAATTTAAAGAATGAGGATTGAGACAACATAA
GAGTTCTAATTTGTTTTCTATTTATCTAAGTTTTGTTCACAATGAAATTG
CCTTATAAGTTAATAGATATTATTAATCATCGATCTTATTTCAGTAATGA
ATTGTTTGTGTCTCCCAACCCACATAACTTCCAATGTCCTCTATCTACTG
GGAGGATAGCACTGTCACTACAAAGCACAGAGATACTGGGTGCAAGCTAT
TCCTGTTTCAGGCTCAAGTTTTGGCAGCATGCCTGTTTACTAAATTTTTG
CTTAATGAGTTCACCCAAATGTACTGATGTATTTGGTTAGTGTTAGGATA
TTACAAATAACTGGGCCCACCCTGCCATTTTAACAGTAAATTTTTTATCA
TTAATGTGATTCAGATTTTGTTAACTTTACAAATATCCACAAGTATATCT
GTATGTCTAGAATGAGGTCAATGAATTAACCAATACTATCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGTTTTATTTCTCCTCCCCCCCCATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCAATAAGAACATAGCAGCCTTATTTAGAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAAAGTGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g16.b1 MSMg01no190_g16.b1 CHROMAT_FILE:
MSMg01no190_g16.b1 PHD_FILE: MSMg01no190_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:39 2005
         (312 letters)



>mm_chr3_24708356_24709067
          Length = 712

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctctgaataagtcgcattttattaatatcagtatgcatactttaagttcttttgct 65
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 aattctctgaataagtcgcattttattaatatcagtatgcatactttcagttcttttgct 265

                                                                       
Query: 66  ctaaagaaccctaagtaatgctctaattaaaaagatgtgggaagaaataaacaagtccct 125
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaaagaaccctaagtaatgctctagttaaaaagatgtgggaagaaataaacaagtccct 325

                                                                       
Query: 126 ttcctgaatttgaaaaagaggccaatatggataaagttacaattaaattaaatttaaaga 185
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcctgagtttgaaaaagaggccaatatggataaagttacaattaaattaaatttaaaga 385

                                                                       
Query: 186 atgaggattgagacaacataagagttctaatttgttttctatttatctaagttttgttca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgaggattgagacaacataagagttctaatttgttttctatttatctaagttttgttca 445

                                                                       
Query: 246 caatgaaattgccttataagttaatagatattattaatcatcgatcttatttcagtaatg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caatgaaattgccttataagttaatagatattattaatcatcgatcttatttcagtaatg 505

                
Query: 306 aattg 310
           |||||
Sbjct: 506 aattg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)