BAC Information

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BAC

Clone NameMSMg01-190H16
Chromosome3 (Build37)
Map Location 148,717,609 - 148,717,802
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368
Downstream geneLOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190H16.T7 (MSMg01no190_h16.b1)MSMg01-190H16.TJ (MSMg01no190_h16.g1)
ACCAG380810AG380811
length787810
length of high quality
(start - end)
---196 (129 - 324)
definitionCHROMAT_FILE: MSMg01no190_h16.b1 PHD_FILE: MSMg01no190_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:44 2005CHROMAT_FILE: MSMg01no190_h16.g1 PHD_FILE: MSMg01no190_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCCCGTGGGAAAGAAAACAGAAAAACACACACCAAATAANNNNAAG
ATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATATGTATATAGTTGCTCGCGCCCCGCCATAATC
GATTGTCTGACGCTTTTCCCACCGCACTTAAATCTTCGCACGAAGGCCAC
GGCAATATTTGGCCCTAACTTTGTCTTATGTCCCATCGGCATTCCAGGTA
TTGACCGCGGTCTTATGGATGAACTTATGCATCGCCN
CACCACCCCCCTTTTTACCCTTACCCACATCCTCCCCCCCCCTCTNNCNA
TTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTAGGGCCTGTGGTTCTCC
TTGCTGCTTGACAAATGCTTGGAAAATGTTGTTGGACCGGCCTTCACTAA
AATGAAAGCAGGATTTATTTAATCCCAGCAAGCTGGCTCTTTATATTTGG
TCCAGCCATTCACGCTAAATCATTTAAGTGTTTCCCTGACCATCAAAATA
GTTCATAGTAAATACAAGTGGATAAGCAGGTAGGGGGGATTAAATGCGAT
ATTCTGCAATTTTAGCTATGTTTAATTTTCTTTAGGCAACGTCATAAATT
GTACTAGCCTAATTTTATCTTTTCCCTCCCCCCTCCCCAGTTCCTGATAG
CCATAAGGCCAAGACAGGAGGATCTCAAGTCAAAGGATTATGATTGTTAG
CCAGTAAGTTCCAACCCTACTTTATCAACTTGACGAATCTCTTTCCAAAT
CTTACAAGAATATGAATAACCCTGTAAAAAGCCCTTACCTAGCATGCCCG
AAAGCCTTATGTATGTCTTTCCACAAATATTATTTTTTTAAAGCACTCCT
ACCCCCATTTCTTGTATCGTTAAGTCGCCATTCCTTATCTATATTTATTT
CCAAGTTTATCCACACAGGAAACTTTTAATCACCCAATAAATTGGTAAAA
TCTAATTGCAATATTGACACTTGTCCACACGGGAGAACCCCGTGCCCTAC
ACACCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_h16.g1 MSMg01no190_h16.g1 CHROMAT_FILE:
MSMg01no190_h16.g1 PHD_FILE: MSMg01no190_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:44 2005
         (196 letters)



>mm_chr3_148717409_148718004
          Length = 596

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttagggcctgtggttctccttgctgcttgacaaatgcttggaaaatgttgttggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agcttagggcctgtggttctccttgctgcttgacaaatgcttggaaaatgttgttggacc 335

                                                                       
Query: 61  ggccttcactaaaatgaaagcaggatttatttaatcccagcaagctggctctttatattt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggccttcaccaaaatgaaagcaggatttatttaatcccagcaagctggctctttatattt 275

                                                                       
Query: 121 ggtccagccattcacgctaaatcatttaagtgtttccctgaccatcaaaatagttcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggtccagccattcacgctaaatcatttaagtgtttccctgaccatcaaaatagttcatag 215

                         
Query: 181 taaatacaagtgga 194
           || |||||||||||
Sbjct: 214 tagatacaagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)