BAC Information

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BAC

Clone NameMSMg01-190I10
Chromosome3 (Build37)
Map Location 6,481,928 - 6,482,226
singlet/doubletsinglet
Overlap genenone
Upstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
Downstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I10.T7 (MSMg01no190_i10.b1)MSMg01-190I10.TJ (MSMg01no190_i10.g1)
ACCAG380842AG380843
length687686
length of high quality
(start - end)
321 (9 - 329)278 (57 - 334)
definitionCHROMAT_FILE: MSMg01no190_i10.b1 PHD_FILE: MSMg01no190_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005CHROMAT_FILE: MSMg01no190_i10.g1 PHD_FILE: MSMg01no190_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGGGAGAGGATCCGCGGAATTCCAATTAATACAATTGCTTCA
GCTTTTTCAAAAGTCCCCTTAAATGCTCAAAATTAAAGTGATTAGTATTT
GGTGGTAGAAATAAAATATCCCCCCTTTTTTTTTTTGCATTGTAAATAGT
CTCTGCTTTCTACTACATAATTAAGTTGCAGACCTTTTTGCACTGGGAAC
ATATTTTAGTGGCAAAGCATCTGTTATAGTTTTCAAATCTTCTAAAGCTG
GACACATACATCATATTTTTTGTAAAAGCAATTATCTATTTTTATGTGAG
TAAATTTTTTGCCATATGCTTTCCTTTCTTTTTTTTATTGCCCCCTCCCC
CCATTTTATTTAATAGATCATACATACCTCTTCAGTGACTTCTTTCAAAA
GACTTGTTTGAAAGCAGCCACACAATTTCTCAGTCATAGATACTGCTGTA
ATCATGGCCTGGTTCAATAGGTAAGATGAAGAATAATGCCAGATCCATTA
CCACTGTGAAAATGAATTCGATGATTACTATTTTCTCATTAAGAATATGT
TCAATTATGCTACAGATGGAACACTCTGGTTTAATGAGGAATTAAAATGA
GTGGAATTAGATTTAAACTAAACTCTCATGAGCATTAATAGAGTGACTAA
AATGAGTGTGGGGATTTATTTATTTATTTATTTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGACATAGTACTACCGGAGGATCCATTTANATCCCTCCTGGGC
ATATCCCCCCAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCAAAAA
AAAAAATAAAACCTTAGTTGGGGGGAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTACAAAGAATGAATTTATGATATTCCTAGCCA
AATGGATGGACCTGTAGGTCATCATCCTGAGTGAGGTAACACTTTCACAA
AGAAACTCACACAATATGTATTCACTGATAAGTACATATTAGCCTCTAAC
CTAGGATTATCTACATATAAAATATAATTTGCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i10.b1 MSMg01no190_i10.b1 CHROMAT_FILE:
MSMg01no190_i10.b1 PHD_FILE: MSMg01no190_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:48 2005
         (321 letters)



>mm_chr3_6481710_6482427
          Length = 718

 Score =  520 bits (269), Expect = e-152
 Identities = 293/303 (96%), Gaps = 5/303 (1%)
 Strand = Plus / Minus

                                                                       
Query: 19  attcc-aattaatacaattgcttcagctttttcaaaagtccccttaaatgctcaaaatta 77
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 517 attccaaattaatacaattgcttcagctttttcaaacgtccccttaaatgctcaaaatta 458

                                                                       
Query: 78  aagtgattagtatttggtggtagaaataaaatatcccccctttttttttttgcattgtaa 137
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 457 aagtgattagtatttggtggtagaaataaaatatccccc----atttttttgcattgtaa 402

                                                                       
Query: 138 atagtctctgctttctactacataattaagttgcagacctttttgcactgggaacatatt 197
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atagtctctgctctctactacataattaagttgcagacctttttgcactgggaacatatt 342

                                                                       
Query: 198 ttagtggcaaagcatctgttatagttttcaaatcttctaaagctggacacatacatcata 257
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 341 ttagtggcaaagcatctgttatagttttcaaatcttctaaagctgcacacatacatcata 282

                                                                       
Query: 258 ttttttgtaaaagcaattatctatttttatgtgagtaaattttttgccatatgctttcct 317
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 281 ttttttgtaaaagcaattatctatttgtatgtgagtaaattttttgccatatgctttcct 222

              
Query: 318 ttc 320
           |||
Sbjct: 221 ttc 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 718
Length adjustment: 9
Effective length of query: 312
Effective length of database: 709
Effective search space:   221208
Effective search space used:   221208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)