BAC Information

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BAC

Clone NameMSMg01-191B04
Chromosome3 (Build37)
Map Location 55,352,087 - 55,352,340
singlet/doubletsinglet
Overlap genenone
Upstream geneB020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B04.T7 (MSMg01no191_b04.b1)MSMg01-191B04.TJ (MSMg01no191_b04.g1)
ACCAG381214AG381215
length764797
length of high quality
(start - end)
320 (46 - 365)188 (82 - 269)
definitionCHROMAT_FILE: MSMg01no191_b04.b1 PHD_FILE: MSMg01no191_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:33 2005CHROMAT_FILE: MSMg01no191_b04.g1 PHD_FILE: MSMg01no191_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATTACACTAGGTCACATGGAGTGTGTTTTTATTGTAAATGTGA
TTTGTAATCCTATTTGTGCTTTTTTTTTCCAAAAAGAAATTATATAGTCT
TTTGCAGGCAGCTTTTCTTTTCTTTTCTTTTGCAGTTTATGAGATGAGAG
TTTCTCTTCTGATGTCCCCTTAATTTCCAGTTTTCCCATTCTGTCTCAAG
AGGAAAGGCACTACTCCTAGTTAGTGCCAGTGGAAGATGAGGAAAATGGA
GGTTTAGTTAGTGCCAGTGGAAGATGAGGAAAATGGAGGTTTAGAAGCTA
TTGTTAAAAATGACTTGAACAGCGCTCGCTTCGGCAGCACATATACTAAA
ATTGGAAAGATACNGAGAAGATTAACAATGGCTCCTGCGCAAGGATGACA
CGCAAGTTCGTGAAGCATTCCATATTTTTACAAAGTTTGGAGCTGAGATG
ATAGGGTGGCCCATATAGAGACTGCTGCACTCGGGAATCCATCCCATAAT
CAGCCACCAAACCCAGACACTATTGGCTATGCCACTCAAGATTTTGCTAA
CAGCACCCTTGATATAGCTGTCATCTTGAAAGGCTAATGCCATTGCTCTG
CCTAAACTTATAAGTGTATTCTTCTCTCTTATCTATTTAGATGTAAATCT
TGTATTTCCAGTTGAACGTACTTCACAGCAGATGGACTATGACATCTACA
CAGATTTTTTGTCA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGGAGGCAGAGGCAA
GCAGATCTTTATGAGTTCAAGGCCAGCCTGCTCTACAGAGTAAGTTCCAG
GACAGCCAGGGCTGCACAGAGAAACCCTGTCTTGAAAAACCAAACAAAAA
CCAATCAAACAAAACAAAAAACCTCAGTGATGATGATGATGATGAGGAGG
AGGAGGAGGAGGAGGACNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNC
NNCCCCCNCNCCCCCCCCCNCCCNCNNNCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNTNNNTNTNTNCNCCCTTCCAAAAAAAAAAAAACTTCCCTCCCT
CTTTTTTTTTTTCTTCCCAACAAAACCTTTATTCTTCTATTATATTTTTT
TTTATTTCTCTATCAACTTTTATTCAAAATATAATTTTCTACTCCCCTAT
TTATACCCTTTATTTTTTTATTCTAATTATTTATTTAATCCCTATAAACC
TTATTCTACCTCCTATTTTCCTTTATCTCTCCCTCTTCCTTCTTTTTTCT
TTCTTCTCCATTCTATTTATTTTTCTTATTTTACCCTTTTCTTTAAATTT
ACTTTTACTCTTTATTCATCTATTCCTTCACCACATTCCTCTTCCCCTCT
TCCTTAATTTCCCTCTTCTCAACCTTCTCCTTCCACCCCCCACCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b04.b1 MSMg01no191_b04.b1 CHROMAT_FILE:
MSMg01no191_b04.b1 PHD_FILE: MSMg01no191_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:33 2005
         (320 letters)



>mm_chr3_55351881_55352603
          Length = 723

 Score =  455 bits (235), Expect = e-132
 Identities = 250/259 (96%), Gaps = 8/259 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcttattacactaggtcacatggagtgtgtttttattgtaaatgtgatttgtaatcct 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcttattacactaggtcacatggagtgtgtttttattgtaaatgtgatttgtaatcct 266

                                                                       
Query: 67  atttgtgctttttttttc---caaaaagaaattatatagtcttttgcaggcagcttttct 123
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttgtgctttttttttttttcaaaaagaaattatatagtcttttgcaggcagcttttct 326

                                                                       
Query: 124 tttcttttcttttgcagtttatgagatgagagtttctcttctgatgtccccttaatttcc 183
           ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttctttt-----gcagtttatgagatgagagtttctcttctgatgtccccttaatttcc 381

                                                                       
Query: 184 agttttcccattctgtctcaagaggaaaggcactactcctagttagtgccagtggaagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agttttcccattctgtctcaagaggaaaggcactactcctagttagtgccagtggaagat 441

                              
Query: 244 gaggaaaatggaggtttag 262
           |||||||||||||||||||
Sbjct: 442 gaggaaaatggaggtttag 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 723
Length adjustment: 9
Effective length of query: 311
Effective length of database: 714
Effective search space:   222054
Effective search space used:   222054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)