BAC Information

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BAC

Clone NameMSMg01-191D01
Chromosome3 (Build37)
Map Location 144,671,218 - 144,671,529
singlet/doubletsinglet
Overlap geneClca3
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6
Downstream geneClca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191D01.T7 (MSMg01no191_d01.b1)MSMg01-191D01.TJ (MSMg01no191_d01.g1)
ACCAG381290AG381291
length688730
length of high quality
(start - end)
312 (36 - 347)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_d01.b1 PHD_FILE: MSMg01no191_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:42 2005CHROMAT_FILE: MSMg01no191_d01.g1 PHD_FILE: MSMg01no191_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACT
TTCTCCCCAGGGAATATTTAGGCATGAAATTCATTTATACATTTCATTCC
AATAAAGATAGTTCTGTCACAGTAAACAGACACCTTCTACAAAAGAAATA
CAGAATTCATTACTTCCTTATAGCTTTCTTAAGTGCAAGAAAAGTGGGCA
GAATTTTTCACTTGGGGAGCCTAGCCTACAGCCCACATGGACAGAGTAAT
CATCTTGACCTGTGCTGGAATTCATCTCTGCTATTTGAAGATATGACAGT
ATCTCTTTGCCAGTAATGGAGAGATAGTAGTACCTAAAAAGTGTGGTGTT
TTTTTCCCCCCCCCGCCTGCCTGTGCATACATTTTGAGGAGGTTGTGGAC
TTGACCGTAATATAACATTCCCTTAGTTTGGAAGGGATAAAGTTCCGTGT
AGTCTCTAATCCTGTTGAGTTCAAAGCACTAATGCACTTTAGTTCTGTGG
AGGCTAAGGCTGGGCCCTTCCTCACGTTTCTCAGCAGTTTGAGATATGAC
ATACATGAGCATGCCGAGAGCACTTTGGTCCCCAGTGCTAGGTTCCTTGC
TGCTAACTGCATGCACTAAAGCCCCCGTTAGTCTTCCCACAGTGGCGGTG
TCTTACAACATTTTAGTTTATGTTTCTTGAACGGTCAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGAGCACAGGGCCCGCCCAG
CTCTGCACCAGGCTCTCCACATATAGAATAGGACTTCCAGCTTTGTGCTT
TTATGATACCCCTGAGTATGACAACAAGAGGGTGTCTGATTCTTGTGCCT
TTGCTTGGGCTCTTTCCTTTCTGTTGGTTTGCTTTGTCCAGCTTCAATGT
GATGGTTTTCGTTTTATCTTATATTTTATTTTTGTTATGTTTGGTCATTC
TCGCTTAGAAGTCTGTTCTTTTCTGATGAGAGACAGAAAGGGAGTAGATA
CAGATGATTTTGGTGCTGCCCAACCCACTGGAAGGAGCAGAGGAAAGGGA
AACTGTGGTCAGAATATATTAAATGAGGAAAAAAATCTATTTTCAATAAA
AGGGGAAATAGATAGATGATAGATAGATAGATAGATAGATAGATACATAC
ATACATACATACATACATACATACATACATAGATTGCAGATAGATAGATA
CATACATACATACATATGTAGATACATAGATAGATATAGATGGCAGATAG
ATAGATACATACATACATACATACATAGGTGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGT
TAGCTTGCTCCCCCCCTTTTCTCGCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_d01.b1 MSMg01no191_d01.b1 CHROMAT_FILE:
MSMg01no191_d01.b1 PHD_FILE: MSMg01no191_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:42 2005
         (312 letters)



>mm_chr3_144671014_144671729
          Length = 716

 Score =  538 bits (278), Expect = e-157
 Identities = 302/312 (96%), Gaps = 4/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactttctccccagggaatatttaggcatgaaattcatttatacatttcattc 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 205 gaattcaaactttctccccagggaatatttaggcatgaaattcatgtatacgtttcattc 264

                                                                       
Query: 65  caataaagatagttctgtcacagtaaacagacaccttctacaaaagaaatacagaattca 124
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 caataaagagagttctgtcacagtaaacagacaccttctacagaagaaatacagaattca 324

                                                                       
Query: 125 ttacttccttatagctttcttaagtgcaagaaaagtgggcagaatttttcacttggggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacttccttatagctttcttaagtgcaagaaaagtgggcagaatttttcacttggggag 384

                                                                       
Query: 185 c----ctagcctacagcccacatggacagagtaatcatcttgacctgtgctggaattcat 240
           |    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 385 caagcctagcctacagcccacatggatagagtaatcatcttgacatgtgctggaattcat 444

                                                                       
Query: 241 ctctgctatttgaagatatgacagtatctctttgccagtaatggagagatagtagtacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctgctatttgaagatatgacagtatctctttgccagtaatggagagatagtagtacct 504

                       
Query: 301 aaaaagtgtggt 312
           ||||||||||||
Sbjct: 505 aaaaagtgtggt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 716
Length adjustment: 9
Effective length of query: 303
Effective length of database: 707
Effective search space:   214221
Effective search space used:   214221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)