BAC Information

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BAC

Clone NameMSMg01-191F12
Chromosome3 (Build37)
Map Location 132,208,190 - 132,208,472
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F12.T7 (MSMg01no191_f12.b1)MSMg01-191F12.TJ (MSMg01no191_f12.g1)
ACCAG381397AG381398
length719723
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_f12.b1 PHD_FILE: MSMg01no191_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:55 2005CHROMAT_FILE: MSMg01no191_f12.g1 PHD_FILE: MSMg01no191_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
CCTCGCTGTCTAAATCTGCACCTCATTTTAAAATAGATTGCTGAGCTCTT
AATCTGTATTATATAGATGGTACTAAGCGGTCCCCAACCAGCGTCCTGCT
GATTGACCTACTGACCTTGCTCTTTAGCTTTACAGAACCTTTTGATGATT
ATATTGAGCGCCTGCCTCATTGATCGTACAGTTCAATAAGGAGTCCTCTT
GTGCCAATGGTATCGAAACCATTGACCACTTTCTCTTCGGTGCCTGAGGA
GATCTAGCGATGGCATGTCTTCACTTGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXGTTTCTTTTCACCCTCACCAACGATGCATCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAAAAAGAGCCTTGCCACCTAA
GAAATGTTAATCTCCCCTCTTGCCCCATGCCAAGAGAGGACCATAAACTA
GATGGGAGATCTGGCTAGAAAGAAGAAAAACAGTGTTGTCCCTGTTAAAT
AATAATCAGAATAAAGACATACAAATGATATCTGGGATTAGCCTACTCCA
AAGGAAACACATTTACCAAGTGAGATCATTTGAGTTACCACAGAACACTT
GATCAGTTTTGCTTATTGATCTGAAATGTCCCTAGGGACCTGTGTGTTAA
AGATTTGGTTTCCAGCCTGCGGCTTTGCTGAGAGGTAGGTGCAACAACAT
CCCAGCTCTTCATGCTGCCATGGAAGGCAAGACTGGAGGATAGAGTGGGA
CCCAAAATCCTTCATCTTTTTCCTGACTGTGAGATAAGAGTTCTTTCTCT
GATGTTTGCTTCTATCATAGAGAACTGCCTTGTCATAGGCAAAGAGCAAC
CAGGCCACACAATCACAGGTGAGAATCTGTGAACTGTGCATGAAGCTGAA
CGCTCTCTCCCTCCAAATTTATTTTCTTGGGTTTTTTGGCTTTGTTTTTG
TTGAAATGGAATTCTAACTATCACAGTTTTAAAGTAATTTTGGAAAATAA
ATAAGCACCTGCCCAAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f12.g1 MSMg01no191_f12.g1 CHROMAT_FILE:
MSMg01no191_f12.g1 PHD_FILE: MSMg01no191_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:55 2005
         (283 letters)



>mm_chr3_132207990_132208672
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaaaagagccttgccacctaagaaatgttaatctcccctcttgccccatgccaagag 60
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 actaaaaagagccttgccatctaagaaatgttaatctcccctcctgccccatgccaagag 260

                                                                       
Query: 61  aggaccataaactagatgggagatctggctagaaagaagaaaaacagtgttgtccctgtt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aggaccataaactagatgggagatctagctagaaagaagaaaaacagtgttgtccctgtt 320

                                                                       
Query: 121 aaataataatcagaataaagacatacaaatgatatctgggattagcctactccaaaggaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aaataataatcagaataaagacatacaaatgacatctgggattagcctactccaaaggaa 380

                                                                       
Query: 181 acacatttaccaagtgagatcatttgagttaccacagaacacttgatcagttttgcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acacatttaccaagtgagatcatttgagttaccacagaacacttgatcaattttgcttat 440

                                                      
Query: 241 tgatctgaaatgtccctagggacctgtgtgttaaagatttggt 283
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgatctgaaatgtccctagggacctgtgtgttaaagatttggt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)