BAC Information

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BAC

Clone NameMSMg01-191J14
Chromosome3 (Build37)
Map Location 118,396,803 - 118,397,110
singlet/doubletsinglet
Overlap geneDpyd
Upstream geneEG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191J14.T7 (MSMg01no191_j14.b1)MSMg01-191J14.TJ (MSMg01no191_j14.g1)
ACCAG381559AG381560
length726734
length of high quality
(start - end)
312 (46 - 357)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_j14.b1 PHD_FILE: MSMg01no191_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:16 2005CHROMAT_FILE: MSMg01no191_j14.g1 PHD_FILE: MSMg01no191_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATGCAATTTTTTTTATAAAGCAGATGGTTTGTTGACTACATTG
CATTTAATCATGAAAATAGGAAAAATTGACCTCCCAACTTTAAAATAATG
AAATGTGTATCTTTTAATTGGAGATGTCCTTTAGAATACTTACTGTCTCT
TTTTTGTGTAGTCATATTTCATAGATATTAGGTGGGTATCTATGTTTTGG
TTGTCAACATATGTATTTCACTATGCTGTTAGAAACAATTGTGTGTGTCT
GTGTGTGCATTTGTGTATGTGAGTATGTATGTGTGCATGTGTGCACATGA
GCATATGTTTTTTTTTATTCCCCACCCCCTGTCTTCCTTAATCACTGTTC
ACTTTGTTTTTCAAAACGAAATCTCATCATGAACTAGGGCTCATTGATTC
AGGTAGTCTGGATGGTCAGAATACACCAGGAAAAATTCTACCTGTCTCCT
CCTTCCTTATGCCAGGATTATAGGTGCACATTGCCATGTCAAGATTTTTA
GCCTACTGTGCCATTTCCCATGCGCACATTGTCGTTTTAAAACCCCTTTT
TGTTAATGCCCTTAACTTTTTCCTAGTTATTTTGGACATAATCTGACCTT
GTATTAGGTCTCATGTAATCTATGCTATAAAAATATGACATGTGAATGGT
TATATTTTATTTCGATGATTTTTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTATGGCGAATGAAGTAAGCC
ATAACTTAATATACAGATTGACACATTCTGGAAGAAAGTATTTCTGAGCC
ATCTGCCCCTACCTCCCGAATGCTAGGATTATAGGCATGCGCTAACCATG
TCTGATTTATGAATTGAGGATATTCATTCACAGACCTGATGCATGCTAGA
TAAACACTTTACTAACTGAGCTACATTACCAGCAAGGCAATAAATATTTT
TGATAATTTAAATGTACATTTTCCTCCAGAAAATGGCTCTCAATGAGGCC
ATCATATCTCTATTTAAACGCGCCACCCCCTGTATACAGGTGATGGGTGA
GGCAGAAATTATGCGGATTTTGTATTTGCATGGACTCTATCTTCTTATTC
ACTGATCATTTGATTTAAAATTCTTAACTTTTAAAATAGGTTTCCTCACT
TACAAATTTAAATGAGACTATATTATACTTAGAGTTGATGCAATTTATAC
CTATATGTGACTGATATAGACATATATAACACTTAATAAATGCTATTCTT
TATGGCATACTGACACTGACATGAATTCAAAGCACGTATTTTTGTAATGC
TGAACGTCTTCTGCTATTTTCTGCCTCCTGGCTTAGACTTAGGGCAGAAC
TGATTGCACAGTGCTCATAATTAAAGGGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_j14.b1 MSMg01no191_j14.b1 CHROMAT_FILE:
MSMg01no191_j14.b1 PHD_FILE: MSMg01no191_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:16 2005
         (312 letters)



>mm_chr3_118396599_118397310
          Length = 712

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgcaattttttttataaagcagatggtttgttgactacattgcatttaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgcaattttttttataaagcagatggtttgttgactacattgcatttaatc 264

                                                                       
Query: 65  atgaaaataggaaaaattgacctcccaactttaaaataatgaaatgtgtatcttttaatt 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgaaaataggaaaaattgacctcccaactttaaaataatgaaatgtgtatcttttaatt 324

                                                                       
Query: 125 ggagatgtcctttagaatacttactgtctcttttttgtgtagtcatatttcatagatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagatgtcctttagaatacttactgtctcttttttgtgtagtcatatttcatagatatt 384

                                                                       
Query: 185 aggtgggtatctatgttttggttgtcaacatatgtatttcactatgctgttagaaacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtgggtatctatgttttggttgtcaacatatgtatttcactatgctgttagaaacaat 444

                                                                       
Query: 245 tgtgtgtgtctgtgtgtgcatttgtgtatgtgagtatgtatgtgtgcatgtgtgcacatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtgtgtctgtgtgtgcatttgtgtatgtgagtatgtatgtgtgcatgtgtgcacatg 504

                   
Query: 305 agcatatg 312
           ||||||||
Sbjct: 505 agcatatg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)