BAC Information

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BAC

Clone NameMSMg01-192B17
Chromosome3 (Build37)
Map Location 136,234,976 - 136,235,383
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192B17.T7 (MSMg01no192_b17.b1)MSMg01-192B17.TJ (MSMg01no192_b17.g1)
ACCAG381895AG381896
length1,2512,021
length of high quality
(start - end)		424 (28 - 451)---
definitionCHROMAT_FILE: MSMg01no192_b17.b1 PHD_FILE: MSMg01no192_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:03 2005CHROMAT_FILE: MSMg01no192_b17.g1 PHD_FILE: MSMg01no192_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATCACTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
CTAAGGAAATGGGATTTGATGACTTGTAATCTTTTAATAGCATTCTCAAT
TATTTTGTGACTTGGTAATCATTCATAAATATATATTGGAGTATATTATT
ATTGCACATGAATTATATAAAAGAATGTTGGATGCAAATAACCATCTTCA
CAAATAGTCTCCAAGTTAAGAACTTTAAAAAAATGCTTCCTACAAATGTA
AACATTGTGAGCCCCCGTAAAGCTGTATATTTTTTATCTTTCTTCCTTCT
ATTGTCCTATCAGGCTGGATATAAAAGTCTCTGAAGAAAACTAAGTCTAT
GGATCAGTAAACAAGTTCTACTTTAAAGAAGACAGTCTTCATGATTTACT
GCTTTAGAATGGAAGCTAGTGACTTAGTTCTCTAGCCTGAAGCATCTCTG
ATCTGTTCCCCCCCCTTATGGTTTGTCTGAAATTAAACAAACGTCTATGT
TACAGATTTGGTTTCCGATATGTCAATAATTGGAGGTGCTGAGCACACCT
TTATGATGTCTATGTCACTTGGGTCTGTGTGCTCTCCAAAGGGATTGTGT
TGCTCTGCCCTATCCTTCTGCCTTGTTTCCCGTTTTGAGATACTGTTGTG
TACTCATACACCCACCTTTTTATTTCCTATACTCTGCCACTTTCTTTGTT
AGTCCAAACTTTGTTTTTTCATTTTTGAACCTGACTTTATATCCTCACCA
CTCTCATTTATATGTCCCTTTAATTCTTTCTTAAACTATTTACCTCTTTT
TTTTCTTTTCTTTTTCTATTTCTTCTTCTCTTACTATTTTCTTTCTTTTC
TATTTTTATCTCTCTCACTTTTTTTTCTTTCTTATTTTTTCGCTCTTTTC
TTTTTTTATCCTATCTCTCTTTTTTTTCTTTCTAATTTTCTTATACCACT
TACTCTTCTTTTACTTCTCTTCCCTTTTTTTTTCTCTTCTAATATCCTCA
CTTCCCATCTATATTTTCTCTATATCTCCTTTCTTCTTTTCTTCTCCTTC
TCTCATCTATTTTCTCTTTTTTTTTCTCCTCTTTCTTTCTTCCCTCTCTC
TCATTTTTAATNTTTTTTACTTCTTTTTATATATTTTTCTACCCTCATTC
TTTTTTTCTCTCATCTTCTCTCTTCTTTCTACATTCCTTTCTTTCCCCTC
TCTTTCATTTCTCTCTTTACATCTCATTACATACTTATTCCTTATTTAAT
C

NTTGTGTGTGGGTCGGGCGCGTGTTGGNCCGCCCCTGTTTCGTNNCCTTT
NTTTTTTTTTTTGGGGCCTGCTCTTCTTCTGGGGTGGTCNGGTGCGGGCC
CCCTCTTTCTGGTGGCGTTGGTGTTTGGNTCCGTGCCTCCCCCGCGCGCG
GCCCTGGTGTGCTGCCCGTCTCGTGGTGTTGTCCGTCCCCCGCCCGCGGT
GTGTGGCTGTGGTGGTGCTCGTGTCTTTGGTGGTGCTCGTGTGCCTGCTT
GTCTTGCCTCCGGCGTGGTGTGTGCGCTCGCTCCTTGTGCCTGCCGCGTG
TGCGCTTTGTGTGGTTTTGCCTCGCGGTGCTTCGCGGCCTGGTGGGTGGG
CGTGGGCTGTGTCTGGTTGCGTTTTCTTCTTCGGTCTCTGTTCTTCTCCT
TCCTGTTGTGTTTGTCTGNGTCTGCTCGCNGTGGTGTCGGGTTGTGTTCT
CTTCTCCGTTGTTCGCGTGTCTGTGGCTGTGTCCNTCTCCTCTCNCGTGC
GTGCTGCCTGTTTTGTCTTTCNTGTCGTGTTGTGTGTTGGTGTGTGTGTC
GCGTCCGTTGTTCGTTCGTGTTGTGCGTGTGTGGCCGTTCCGTTTGTGTG
CGGGGCGTGGTGTTGCCGTGGTTTTTTTTTCTTGTTTTGCCGCGCGTGGC
CGTCCGNGCTGCTTTGTCTCTTGTTGTGGTGGGGGGNGTGGGGGGGTGGG
TGTTTTTTTTTTTTGTTGCTTTCCTCCNNCCCGNNCCCCCGGNNNNNNNN
NNNGNNCNCCCTCTCCCCCCCCCGGGGGGNNNNCGGGGNNNNGGGGNNNN
NNNNCNCNNNNNNNNCCCNNCCGNNCCGCCGGCGCGCGGCCGCGCGCGGT
GCGCGTGTTCGTGTTGTGGTTTTGCGTGTTCTGTGTCGTGTCGTGTGTTC
GTTGTTGTGGTGTCCTGTCTGGCGGCGCCTGTGTGTTTTTTCGGCGTCTC
TCGTTTGTGGGTGTTTGCGTGTCGTGCTCTCGTGCGGCTGTTTCGTTGTG
CTGTCTTTTGTTGGTGTGTGTGTGTGTGCTCGCTGTTGCTCGTGTCTCTC
GTTTTGTGCTGTTCTTGTGCTTGGTTTTGGTGTGGCCGTCTCGTTTTCTC
TCCCTTCCGCTGGTCGGTTTCGGTTTGTGTGCCTGGTGTTCTTCGTTGCT
GTCGTCGCGTCTCGGTTTTTGCTGGTGTCTGTGTTGTGGNTCGCTCGTGG
CGTTTGTTGTCTGTTGTTGNTCGCGGCGCTTCTCGTTCTTGCTTGTGTTC
GGGCTTGGGGTCGTGTGCTGGCTGCTGCTTGTGTTGCGTGTGTGTGTGCT
GTTTGTGGTCTTTGTTCTTTTCGTCCTTTTGTTCTGCCGTTGTGTGGGCT
TGTTGTGGTGTGTGCTTGTTGTGCTGCTGCTCGTCTTGGTCTGTGCGTTG
CTCTGTCGTTGCCGCTGCTGTCTCTGTCGTGTCGGTGCTGGGTGTCGTGG
TTCGTCCGTGCGCTGTGNCGTGCGCGGGTCTTTTCGTGTTGTCTCTCGTG
CTGTCGTGNTGTCCTGTGTGCTGGGGTGGGTGGTCGTGGTTGTCTGGTTC
GTGCTGTCTGTCGTGTTGTGTGTGCTGCGTGTCTGGTGCGCGCTGGTCGG
TGTTTTTTGTCGTGTCTGTGTGCGTGTGNTTGTGTGTGTGCTTTGCTTCG
CGCGTCTCTGCTGGCCGNGTGTGTCGGTGTGTCTTNTTGTGCTGTCTCCG
TCGTCGTTGGTCTGNGCGGTTGTGCTGCTTGTGCTGTGTGTCTGCTTTGC
GTGTGTGTGTCNGTCCTGTTCGCCGGGTGTCGGTGNTGTGGTCTGTCTTG
TGTGCGTCTCTGTCTGCGTGNGTTCGGTTGTTGTTCTCGTGCTCGTTGTG
CCTTTGCGCTCTGTGTGCGTGTGTGTTTNCTTGCGCNTTGTTGCTGGGCT
CGGTGGTGTCTGTNTGTGCTNCGCNTGTGCGTGCGCTGTCGCTCGNGCTG
CGNCGGNCTCGTTCGCTCGTTTTGCTGTCTCTGTGTCTTCGCGTGTTCGC
TCTGNTGTCTGCGTTTGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_b17.b1 MSMg01no192_b17.b1 CHROMAT_FILE:
MSMg01no192_b17.b1 PHD_FILE: MSMg01no192_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:03 2005
         (424 letters)



>mm_chr3_136234760_136235583
          Length = 824

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaattcctaaggaaatgggatttgatgacttgtaatcttttaatagcattctcaattat 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaattcctaaggaaatgggatttgatgacttgtaatcttttaatagcattctcaattat 565

                                                                       
Query: 77  tttgtgacttggtaatcattcataaatatatattggagtatattattattgcacatgaat 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgtgacttggtaatcattcataaatatatattggagtatattattattgcacatgaat 505

                                                                       
Query: 137 tatataaaagaatgttggatgcaaataaccatcttcacaaatagtctccaagttaagaac 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatataaaagaatgttggatgcaaataaccatcttcacaaatagtctccaagttaagaac 445

                                                                       
Query: 197 tttaaaaaaatgcttcctacaaatgtaaacattgtgagcccccgtaaagctgtatatttt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttaaaaaaatgcttcctacaaatgtaaacattgtgagcccccgtaaagctgtatatttt 385

                                                                       
Query: 257 ttatctttcttccttctattgtcctatcaggctggatataaaagtctctgaagaaaacta 316
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 ttatctttcttccttctattgtcctatcagtctggatataaaagtctctgaagaaaacta 325

                                                                       
Query: 317 agtctatggatcagtaaacaagttctactttaaagaagacagtcttcatgatttactgct 376
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatctatggatcagtaaacaagttctactttaaagaagacagtcttcatgatttactgct 265

                                                           
Query: 377 ttagaatggaagctagtgacttagttctctagcctgaagcatctctga 424
           |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 ttaggatggaagctagtgacttagttctctagcctgaatcatctctga 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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