BAC Information

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BAC

Clone NameMSMg01-192F15
Chromosome3 (Build37)
Map Location 62,752,246 - 62,752,643
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149, LOC676984
Downstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192F15.T7 (MSMg01no192_f15.b1)MSMg01-192F15.TJ (MSMg01no192_f15.g1)
ACCAG382057AG382058
length1,2891,215
length of high quality
(start - end)
406 (42 - 447)325 (69 - 393)
definitionCHROMAT_FILE: MSMg01no192_f15.b1 PHD_FILE: MSMg01no192_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:35 2005CHROMAT_FILE: MSMg01no192_f15.g1 PHD_FILE: MSMg01no192_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTACATTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTATCTGTTCTTCTTCCCAGATGAATAAATCTTCTTTATCTGACTCC
ATTTCCTCACCCTTTTAATAGGCATTTTGGCAACTGTTGCCCAGGGTTCC
AGCTGCTATATTACAATTTGGTAACACTGTCAGTTTATCTCTGTACATTT
TTTGAGAGAAGAAGAGTGATTTCTCTTTCCTTTATGATGTCAGCTGACCC
TATTCAGGGTTCCCATATTTTTAGCCCAACAGAGTCTCATTATGGAACTC
TGGCTGGCCTGAAACTTGCTGTGAAGACTAGACTTGGTTTTAACTCACAA
AGATCCTCTTGCCTCTGCCTGTTGAAATTCCTACTGAAATTCTAAGCCCT
GCCCTGTTGTTCTTCCTCCTAATGACTATTTTTGAGTTCCTCTGCATATC
TGTTTTTCCCCCCCCTTTAACTAGAAGAGCAAGAACCAAAAAACAGGTAC
TGCATCTTTTATGAAAAAGAGAATAAGCAAATGAGTTGTTAAGCCAATTG
CTAGTCTAACAATGGCTTCAAAATGTCATACCACCACCGGGTGGTGGTGG
CGCATGCCTCTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTG
AGTTCGAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCT
AAACAGAGAAAACCTGTCTCGAAAAACTAAACAAAACCTAACAAAACCAA
ACAAAAACAAAAACCAAAAAACAAAAACAAAACAACAAAAACTAAAACAA
CAAAAAAACCACAAAATATCATACCACTCTGTGATACAATAGACTTGGTT
GTCAACTATCATACTCATGTAAAAAAAGGTTGACTTCATAAAACTGACAT
TATTTAGGGAATTACTAACCAAATTTGCTTAGGACACATTTAATCCCACC
AATGTGAATTTACTTAATGTATCATGTTCCTGCATCTACCCCAAAAATAA
TTATATTCTCTACTCGGCCTTTATTAGAATACCCATATTTTTCATTCTTG
CATTGAATTTCTTTACCCCCTACATTCATCACACTTTATTTCCCTTTTTT
AAATAAGTCTCCCAGTATCTGTCTTTCTTACATATCCTTCGACTTCACAA
TTTTTCCTTATCGACTTTCTTATCGTCCTTCACTTATCTCTTTCTCTCCT
TCATTCTTCATTCTCTCTATCTTCTTTCTAGTTATTCCTCTTTCTACATT
TTATCNTCTCTCTCGTAACTTTTTCTCCTCATCCTCACT
NNCCGTTGATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATATATGCTACTAAATGCTGCAGGATTTT
TCTGTCCCCTTACATGAGTGCAGAGGAGGACTGTGTTTGGACAGAGAAGG
GAGGCAGAGCTAAGAGTTGAAAGACATACTGCATCTGGGGGACTAGGGGG
AAATCCAAGATGGATTCAGACATGAACCCATGTGGCATTTACCAGCCACA
AGTAGCTATGATTTCACAAGTTAGAAATATTGGGATAAAGTGTTTATCAT
TATCAATTGGCTCTGAAATTATTTTTTTAGCATATTGTTAATTGTTATAT
TTTGATACATAAATAGGTTTTGTTAATTAAGCTTTAAGAGGCATGTTTTT
TTTTNGGGAACGGGGNCAANGACAAGNAACTGGGAGGAAGGAAGCTTTTT
TTANTTCCCGCCGNCCGGAANAANNCCCCCTCCCCACAACAGGAGAGGGG
GGGGTNNNNTNGNGNNTNTNGNNNNNNGNNTGTCTTTGNTGGGNNNNCTG
TTGGGTTGCTGTNGTGGGTGGGGGTGGGGTGNNNTTTTTNTTTGTTTTTG
TTTGGGGTTTTGTGTGGTCGGTTCTTTGTTCCGGGCGGTTTGTCCTTGCC
TTCNGTGCCCCCTCTCTCCCCTGGGGCGTTCCGGTTTTTCGGGCGGGTGC
CTTTTGCGTGCGGGTTTTCTGGGCGGTGCGTCCCCTTGTGGGGTCCGTGC
TGCGCGCGCCNCGCCTTTTTTTTTTTTTTTTTCCCGTGCCCGTCGCGGCC
CCGCGCTCTCGTTGGCCGTTCTGGTGCGTCTGGGCGCGTCCGCGGGTTGC
TTTTTGGTGGCGCTGCGTCCGTGCCTGGCGGGTGCGTCCGGGTCTCCGCG
CGGCGTGCTCTGCCCGGGCTGGCTGGTCTCTCTGGCCGGCTGCTGCCGTT
TTGGGTGTGCTGCTCGCGTGCCTGTCCGTCTGCGGTTCGCTCTGTCCGCT
CCTCGGTGTCCCTTCTCTCTCTGTTCCTCGCCCGCGCTCTGTGGGTCGGC
TCTTCCTCTCCTTCTTCTCCTCCGTCGGCCGTCCCTCGCTCCCTCCCTCG
GTTCTTTCTGTGGTNGCTCCCTGCGTGTCCTTCCTGTCGTTTCGGTTTTG
GTTTCTCCTCCCGTCCCCGGCTNCTGGTGCTCCTGGTTGTCCTCTTGCTC
TTCTTTGCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_f15.b1 MSMg01no192_f15.b1 CHROMAT_FILE:
MSMg01no192_f15.b1 PHD_FILE: MSMg01no192_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:35 2005
         (406 letters)



>mm_chr3_62752207_62753012
          Length = 806

 Score =  708 bits (366), Expect = 0.0
 Identities = 390/398 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttttatctgttcttcttcccagatgaataaatcttctttatctgactccatttcctca 68
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 437 tcttttatctgttcttcttcccagatgaataaatcttcttcatctgactccatttcctca 378

                                                                       
Query: 69  cccttttaataggcattttggcaactgttgcccagggttccagctgctatattacaattt 128
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 cccttttaatagacattttggcaactgttgcccagggttccagttgctatattacaattt 318

                                                                       
Query: 129 ggtaacactgtcagtttatctctgtacattttttgagagaagaagagtgatttctctttc 188
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 317 ggtaacactgtcagtttatctctgtacatctttagagagaagaagagtgatttctctttc 258

                                                                       
Query: 189 ctttatgatgtcagctgaccctattcagggttcccatatttttagcccaacagagtctca 248
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 ctttatgatgtcagctgaccctattcagggttcccatattttcagcccaacagagtctca 198

                                                                       
Query: 249 ttatggaactctggctggcctgaaacttgctgtgaagactagacttggttttaactcaca 308
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttatgaaactttggctggcctgaaacttgctgtgaagactagacttggttttaactcaca 138

                                                                       
Query: 309 aagatcctcttgcctctgcctgttgaaattcctactgaaattctaagccctgccctgttg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aagatcctcttgcctctgcctgttgaaattcctactgaaattctaagccctgccctgttg 78

                                                 
Query: 369 ttcttcctcctaatgactatttttgagttcctctgcat 406
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttcttcctcctaatgactatttttgagttcctctgcat 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)